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Q0ID36 (Q0ID36_SYNS3) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase HAMAP MF_01201
EC=5.1.1.1 HAMAP MF_01201
Gene names
Name:alr HAMAP MF_01201
Ordered Locus Names:sync_0406
OrganismSynechococcus sp. (strain CC9311) [Complete proteome] [HAMAP] EMBL ABI45550.1
Taxonomic identifier64471 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length393 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Provides the D-alanine required for cell wall biosynthesis By similarity. HAMAP MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP MF_01201 SAAS SAAS009006

Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP MF_01201

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site571Proton acceptor; specific for D-alanine By similarity HAMAP MF_01201
Active site2861Proton acceptor; specific for L-alanine By similarity HAMAP MF_01201

Amino acid modifications

Modified residue571N6-(pyridoxal phosphate)lysine By similarity HAMAP MF_01201

Sequences

Sequence LengthMass (Da)Tools
Q0ID36 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: E58F2346426919AD

FASTA39342,854
        10         20         30         40         50         60 
MRDQIADDRN APWILNPVEA NPRQRAWLEV SDSAIEANAR SLKRHLGPHC DLMAVVKADG 

        70         80         90        100        110        120 
YGHGAETVAK ASVRGGATSF GVATLQEGID LRNAGLDQPV LVLGHLSQPD DLRACLQWRL 

       130        140        150        160        170        180 
MPTLSSMREA LLCQNLADSS GRRFPVQLKV DTGMTRLGCD WKDGKRLAHA IQQLDQLSLS 

       190        200        210        220        230        240 
GIYSHLALAD GERDGPAAQV TKLQEDRFES ITRELRSPTL KRHLANSAGT LRDTGLHHDL 

       250        260        270        280        290        300 
VRVGLALYGH CPSEHLDGIL NLEPAMSVKA KVSLIREVPA GVGVSYGHRF VTQRPSRLAV 

       310        320        330        340        350        360 
VSIGYADGVS RCLSGRIHAL HAGQTLPQVG AITMDQLILD ATEHRGLESG DVVTLLGRDG 

       370        380        390 
EETISPRTWA QLADSIPWEV LCSFKHRLPR LVI

« Hide

References

[1]"Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment."
Palenik B., Ren Q., Dupont C.L., Myers G.S., Heidelberg J.F., Badger J.H., Madupu R., Nelson W.C., Brinkac L.M., Dodson R.J., Durkin A.S., Daugherty S.C., Sullivan S.A., Khouri H., Mohamoud Y., Halpin R., Paulsen I.T.
Proc. Natl. Acad. Sci. U.S.A. 103:13555-13559(2006) [PubMed: 16938853] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000435 Genomic DNA. Translation: ABI45550.1.
RefSeqYP_729636.1. NC_008319.1.

3D structure databases

ProteinModelPortalQ0ID36.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ0ID36.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4261616.
GenomeReviewsGene locus sync_0406 in contig CP000435_GR.
KEGGsyg:sync_0406.
PATRIC23791668. VBISynSp88089_0412.
TIGRsync_0406.

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHBG712172.
OMATRKEDAN.
PhylomeDBQ0ID36.
ProtClustDBPRK00053.

Family and domain databases

HAMAPMF_01201. Ala_racemase.
[Tree]
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
Gene3DG3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 1 hit.
KOK01775.
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. Alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0ID36_SYNS3
AccessionPrimary (citable) accession number: Q0ID36
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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