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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC2

Organism
Synechococcus sp. (strain CC9311)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoC2UniRule annotation
Ordered Locus Names:sync_2356
OrganismiSynechococcus sp. (strain CC9311)
Taxonomic identifieri64471 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeSynechococcus
Proteomesi
  • UP000001961 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003535341 – 1365DNA-directed RNA polymerase subunit beta'Add BLAST1365

Interactioni

Subunit structurei

In cyanobacteria the RNAP catalytic core is composed of 2 alpha, 1 beta, 1 beta', 1 gamma and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi64471.sync_2356.

Structurei

3D structure databases

ProteinModelPortaliQ0I7L9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D27. Bacteria.
COG0086. LUCA.
HOGENOMiHOG000069393.
KOiK03046.
OMAiTHAGEIW.
OrthoDBiPOG091H14Z8.

Family and domain databases

HAMAPiMF_01324. RNApol_bact_RpoC2. 1 hit.
InterProiIPR012756. DNA-dir_RpoC2_beta_pp.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02388. rpoC2_cyan. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0I7L9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSTPSKSRK SAKAAKAAKA EAAAFAKSRA LSKTPPPFRN RVVDKKVLKE
60 70 80 90 100
LVAWAFKNHG TAATASMADQ LKDLGFKYAT QAAVSISVND LKVPAAKKDL
110 120 130 140 150
LDQAEELITE TEESYRLGVI TEVERHTKVI DTWTETNERL VDAVKKNFND
160 170 180 190 200
NDPLNSVWMM ANSGARGNMS QVRQLVGMRG LMANPQGEII DLPIRTNFRE
210 220 230 240 250
GLTVTEYVIS SYGARKGLVD TALRTADSGY LTRRLVDVAQ DVIVREDDCG
260 270 280 290 300
TMRSIMVKAE DGRFGNRLVG RLTADQVLGA DGEVIAERNS EIDPPLSKRF
310 320 330 340 350
EAAGVSALMV RSPLTCEANR SVCRKCYGWA LAHNQLVDLG EAVGIIAAQS
360 370 380 390 400
IGEPGTQLTM RTFHTGGVST AESGVVRSKF EGTVEFGSKA KVRPYRTPHG
410 420 430 440 450
VNAQQSDVDF SLTIKPSGSG KPQKIEITNG SLLFVDDGQK IASDVTVATI
460 470 480 490 500
AAGAVQKSVE KATKDVICDL AGQVSYDPTI QPREVTDRQG NITHKAQRLG
510 520 530 540 550
RMWVLAGDVY NLPPNARPVV SSGGSVIESQ VLAEASQASE YGGAIRLREA
560 570 580 590 600
LGDSREVQIV TTSMTLRDFK LLGESTHAGE IWNLEAKDGT RYRLNTIPGS
610 620 630 640 650
KIGNAEVIAE LADDRFRTQT GGLVKFAPGL AIKKARSAKN GYEVNKGGTL
660 670 680 690 700
LWIPQETHEI NKDISLLMIT DGQWIEAGTE VVKDIFSQTA GIVSVTQKND
710 720 730 740 750
ILREIIVRSG SFHLCTEKKA LERFQGDGVM VNPGEAIAKG ISSDAMVFVQ
760 770 780 790 800
AVETPEGTGL LLRPVEEYTI PNEAQLPDLG HVKQPNGPHL GIKATQRLAF
810 820 830 840 850
KDNELVKSVE GVELLRTQLM LETFDTTPQM TVDVEAVPDK RAKTIERLQL
860 870 880 890 900
VILESILVRR DTISDSSHGS THTELQVEDG QSIKAGDVVA TTQILCKQAG
910 920 930 940 950
VAEMPEATED EPVRRLIVER PEDTITINTS GAPVVTVGQR VVDGEELAQG
960 970 980 990 1000
QPSDCCGEVE QVSANSVTMR LGRPYMISPD SLLHVRDGDL VQRGDGLALL
1010 1020 1030 1040 1050
VFERQKTGDI VQGLPRIEEL LEARRPRESS ILCKKPGTVE IKQGEDDEFT
1060 1070 1080 1090 1100
TVTVIESDDA IAEYPILLGR NVMVSDGQQV NAGELLTDGP INPHELLECF
1110 1120 1130 1140 1150
FEDLRSRKPL MDAAQEAIAK LQHRLVTEVQ NVYKSQGVSI HDKHIEVIVR
1160 1170 1180 1190 1200
QMTSKVRIED AGDTTLLPGE LIELRQVENT NQAMSITGGA PAEFTPVLLG
1210 1220 1230 1240 1250
ITKASLNTDS FISAASFQET TRVLTEAAIE GKSDWLRGLK ENVIIGRLIP
1260 1270 1280 1290 1300
AGTGFSGFEE ELRAEAGPHP DILSEDPAGY RRMQNLRPDY TVDMPAAPAA
1310 1320 1330 1340 1350
KSTALLDDPS AADLEATRSR HGIEAEASNF AAFTRPDADN ELAEEQVLDP
1360
AAVENLQEQG LLSDE
Length:1,365
Mass (Da):148,213
Last modified:October 3, 2006 - v1
Checksum:i031F0E2942B53AB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000435 Genomic DNA. Translation: ABI46015.1.
RefSeqiWP_011620263.1. NC_008319.1.

Genome annotation databases

EnsemblBacteriaiABI46015; ABI46015; sync_2356.
KEGGisyg:sync_2356.
PATRICi23795806. VBISynSp88089_2452.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000435 Genomic DNA. Translation: ABI46015.1.
RefSeqiWP_011620263.1. NC_008319.1.

3D structure databases

ProteinModelPortaliQ0I7L9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi64471.sync_2356.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI46015; ABI46015; sync_2356.
KEGGisyg:sync_2356.
PATRICi23795806. VBISynSp88089_2452.

Phylogenomic databases

eggNOGiENOG4105D27. Bacteria.
COG0086. LUCA.
HOGENOMiHOG000069393.
KOiK03046.
OMAiTHAGEIW.
OrthoDBiPOG091H14Z8.

Family and domain databases

HAMAPiMF_01324. RNApol_bact_RpoC2. 1 hit.
InterProiIPR012756. DNA-dir_RpoC2_beta_pp.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02388. rpoC2_cyan. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRPOC2_SYNS3
AccessioniPrimary (citable) accession number: Q0I7L9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 4, 2008
Last sequence update: October 3, 2006
Last modified: November 2, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.