Q0I6K6 (Q0I6K6_SYNS3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcription termination/antitermination factor NusG EMBL ABI45394.1

Gene names

Name:	nusG EMBL ABI45394.1
Ordered Locus Names:	sync_2728

Organism

Synechococcus sp. (strain CC9311) [Complete proteome] [HAMAP] EMBL ABI45394.1

Taxonomic identifier

64471 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	192 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function

Influences transcription termination and antitermination. Acts as a component of the transcription complex, and interacts with the termination factor rho and RNA polymerase By similarity. SAAS SAAS006645

Ontologies

Keywords
Biological process	Transcription Transcription antitermination SAAS SAAS006645 Transcription regulation Transcription termination SAAS SAAS006645
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	positive regulation of transcription elongation from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro transcription antitermination Inferred from electronic annotation. Source: UniProtKB-KW transcription termination, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0I6K6 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 578120287131E412	FASTA	192	21,383
	10 20 30 40 50 60 MPARTSVARW YAVQVASSCE KKVKATLEQR AVTLGVSNRI LEIEIPETPA VKVKKDGSRQ 70 80 90 100 110 120 STEEKVFPGY VLVRMVLDED TMMAVRSTPN VINFVGAEDR RATGKARGHI KPRPLSRQEV 130 140 150 160 170 180 DRIFKRAAEK KTVVKVDLAE GDQILVTAGP FKDFQGEVIE VSGERSKLKA LLSIFGRETP 190 VELEFSQISK QN

References

[1]

"Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment." Palenik B., Ren Q., Dupont C.L., Myers G.S., Heidelberg J.F., Badger J.H., Madupu R., Nelson W.C., Brinkac L.M., Dodson R.J., Durkin A.S., Daugherty S.C., Sullivan S.A., Khouri H., Mohamoud Y., Halpin R., Paulsen I.T. Proc. Natl. Acad. Sci. U.S.A. 103:13555-13559(2006) [PubMed: 16938853] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000435 Genomic DNA. Translation: ABI45394.1.
RefSeq	YP_731916.1. NC_008319.1.
3D structure databases
ProteinModelPortal	Q0I6K6.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0I6K6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4260688.
GenomeReviews	Gene locus sync_2728 in contig CP000435_GR.
KEGG	syg:sync_2728.
PATRIC	23796584. VBISynSp88089_2833.
TIGR	sync_2728.
Phylogenomic databases
eggNOG	COG0250.
HOGENOM	HBG751162.
OMA	VASGCEK.
PhylomeDB	Q0I6K6.
ProtClustDB	PRK05609.
Family and domain databases
InterPro	IPR005824. KOW. IPR001062. Transcrpt_antiterm_NusG. IPR015869. Transcrpt_antiterm_NusG_bac_CS. IPR006645. Transcrpt_antiterm_NusG_N. IPR014722. Transl_SH3-like_sub. IPR008991. Translation_prot_SH3-like. [Graphical view]
Gene3D	G3DSA:2.30.30.30. Ribosomal_L2. 1 hit. G3DSA:3.30.70.940. Transcrpt_antiterm_NusG_N. 1 hit.
KO	K02601.
Pfam	PF00467. KOW. 1 hit. PF02357. NusG. 1 hit. [Graphical view]
PRINTS	PR00338. NUSGTNSCPFCT.
SMART	SM00739. KOW. 1 hit. SM00738. NGN. 1 hit. [Graphical view]
SUPFAM	SSF82679. Transcrpt_antiterm_NusG_N. 1 hit. SSF50104. Transl_SH3_like. 1 hit.
TIGRFAMs	TIGR00922. NusG. 1 hit.
PROSITE	PS01014. NUSG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0I6K6_SYNS3

Accession

Primary (citable) accession number: Q0I6K6

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	January 25, 2012
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)