Q0I680 (Q0I680_SYNS3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase sigma-70 factor family protein EMBL ABI45668.1

Gene names

Ordered Locus Names:

sync_2855

Organism

Synechococcus sp. (strain CC9311) [Complete proteome] [HAMAP] EMBL ABI45668.1

Taxonomic identifier

64471 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	376 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0I680 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: A3249E354D2265A6	FASTA	376	43,625
	10 20 30 40 50 60 MSASSSSTGS APIRWSGGND LLRLYLQDIG RVDLLTAEDE VVLSRLVQQY ERLKREERQF 70 80 90 100 110 120 AEDHPAIERL LCLEELQLRE ANHLSHWPTR QEWARAAEMP LQELNKGLTQ GYETWANLIS 130 140 150 160 170 180 TDSRELQLRL RRGRKARDRM IQANLRLVVA VAKKYQHRGM ELLDLVQEGT LGLERAVEKF 190 200 210 220 230 240 DSTRGFRFST YSYWWIRQGI TRAIATQSRT IRLPVHITEK LNRIKRVQQE IASNEGRTAS 250 260 270 280 290 300 MTDLARELSV SEDTVRQTLA RVPRSVSLET KVGRDQDTQL GELLEDEHAT PEQTLTRDSL 310 320 330 340 350 360 HDDLEHLLNE LTPREATVIR CRFGLEDDTP RTLAQIGEDM NLSRERVRQI ETRALLKLRQ 370 PQRRNKVRDY IQSLDS

References

[1]

"Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment." Palenik B., Ren Q., Dupont C.L., Myers G.S., Heidelberg J.F., Badger J.H., Madupu R., Nelson W.C., Brinkac L.M., Dodson R.J., Durkin A.S., Daugherty S.C., Sullivan S.A., Khouri H., Mohamoud Y., Halpin R., Paulsen I.T. Proc. Natl. Acad. Sci. U.S.A. 103:13555-13559(2006) [PubMed: 16938853] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000435 Genomic DNA. Translation: ABI45668.1.
RefSeq	YP_732042.1. NC_008319.1.
3D structure databases
ProteinModelPortal	Q0I680.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0I680.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4260983.
GenomeReviews	Gene locus sync_2855 in contig CP000435_GR.
KEGG	syg:sync_2855.
PATRIC	23796854. VBISynSp88089_2967.
TIGR	sync_2855.
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q0I680.
ProtClustDB	CLSK826321.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0I680_SYNS3

Accession

Primary (citable) accession number: Q0I680

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)