Reviewed, UniProtKB/Swiss-Prot Q0I0C9 (SELD_SHESR)

Names and origin

Protein names

Recommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein

Gene names

Name:	selD
Ordered Locus Names:	Shewmr7_0170

Organism

Shewanella sp. (strain MR-7) [Complete proteome] [HAMAP]

Taxonomic identifier

60481 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	352 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity. HAMAP MF_00625
Sequence similarities	Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Ontologies

Keywords
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP selenide, water dikinase activity Inferred from electronic annotation. Source: HAMAP selenium binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 352	352	Selenide, water dikinase HAMAP MF_00625		PRO_1000051606
Regions
	Nucleotide binding	236 – 242	7	ATP Potential
Sites
	Active site	23	1	Potential
	Site	26	1	Important for catalytic activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q0I0C9-1 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 36D13CE34A1243B1	FASTA	352	36,811
	10 20 30 40 50 60 MSNSAVSSAD SIKLTEYSHG AGCGCKISPK VLTTILASQL PVFTDPNLLV GNQSRDDAAV 70 80 90 100 110 120 YKLNDEIGII STTDFFMPIV DDPFTFGRIA ATNAISDIYA MGGTPMMAIA ILGWPVNKLP 130 140 150 160 170 180 AEIAQQVVDG GRQACMEAGI MLAGGHSIDA PEPIFGLAVT GQIALTDLKQ NDTAKAGDRL 190 200 210 220 230 240 YLTKPIGIGI LTTAQKQKKL KDEDSQIAVN AMCQLNSIGA KIAKITGVNA LTDVTGFGLA 250 260 270 280 290 300 GHLLEVCQGA KLTAKLDLDS VPLLPRALDY LAQGCIPGGT HRNYDSYGEH LPALTDHQKA 310 320 330 340 350 ILCDPQTSGG LLVAVSSEAE AELVALLNAH QIEPICIGSL ETPTSTANVV LC

References

[1]

"Complete sequence of chromosome 1 of Shewanella sp. MR-7." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000444 Genomic DNA. Translation: ABI41176.1.
RefSeq	YP_736233.1.
3D structure databases
SMR	Q0I0C9. Positions 11-341.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0I0C9.
Genome annotation databases
GeneID	4257558.
GenomeReviews	Gene locus Shewmr7_0170 in contig CP000444_GR.
KEGG	shm:Shewmr7_0170.
NMPDR	fig|60481.10.peg.165.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0709.
HOGENOM	HBG383791.
OMA	MMAIAIL.
Family and domain databases
HAMAP	MF_00625. SelD. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR016188. PurM_N-like. IPR004536. SelD. [Graphical view]
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMs	TIGR00476. selD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_SHESR

Accession

Primary (citable) accession number: Q0I0C9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	October 3, 2006
Last modified:	February 9, 2010
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)