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Q0HV71 (ARAA_SHESR) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase
EC=5.3.1.4
Gene names
Name:araA
Ordered Locus Names:Shewmr7_1995
OrganismShewanella sp. (strain MR-7) [Complete proteome] [HAMAP]
Taxonomic identifier60481 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length500 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519

Sequence similarities

Belongs to the arabinose isomerase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 500500L-arabinose isomerase HAMAP MF_00519
PRO_0000312619

Sites

Metal binding3061Manganese By similarity
Metal binding3331Manganese By similarity
Metal binding3491Manganese By similarity
Metal binding4481Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
Q0HV71 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: FD9CC589BAB4F462

FASTA50055,305
        10         20         30         40         50         60 
MKAFKQKQVW FITGSQDLYG PKVLEQVAKN SEQIVHGFNE SSAISIEVVY KPTVKSPREI 

        70         80         90        100        110        120 
HAVCQAANSD ENCVGVILWM HTFSPAKMWI AGLNELSKPF MHLHTQFNAE LPWSEINMNY 

       130        140        150        160        170        180 
MNTHQSAHGC REFGFIGTRM RKERKVVVGH WQSSDVQAQI DDWCRAAAGW HESQNLRIAR 

       190        200        210        220        230        240 
FGDNMRQVAV TEGDKVAAQI QFGYEVHAYS LGELNEAIAA IAEGDVTAQL DRYASEYQVG 

       250        260        270        280        290        300 
NELFGDEYQL DRLRKEAKIE LGLTQFLTQG GFGAFTNCFE NLTGMTGLPG LATQRLMANG 

       310        320        330        340        350        360 
FGYGGEGDWK TAAMVRIMKV MGQGRAGGTS FMEDYTYNFG ATDQVLGAHM LEVCPSIAAA 

       370        380        390        400        410        420 
KPRLEVHRHT IGVRCDVPRL LFTGKAGPAI NVSTIDLGNR FRIILNELDT VTPPQDLPNL 

       430        440        450        460        470        480 
PVASALWEPR PNLAVAAAAW IHAGGAHHSA YSQAITTDQI VDFAEMAGAE LVIIDADTKI 

       490        500 
REFKNELRQN SVYYGLARGL

« Hide

References

[1]"Complete sequence of chromosome 1 of Shewanella sp. MR-7."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MR-7.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000444 Genomic DNA. Translation: ABI42984.1.
RefSeqYP_738041.1. NC_008322.1.

3D structure databases

ProteinModelPortalQ0HV71.
SMRQ0HV71. Positions 1-496.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ0HV71.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4258681.
GenomeReviewsGene locus Shewmr7_1995 in contig CP000444_GR.
KEGGshm:Shewmr7_1995.
NMPDRfig|60481.10.peg.1886.
PATRIC23589091. VBISheSp85603_2057.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2160.
HOGENOMHBG297198.
OMAEVCPTIA.
ProtClustDBPRK02929.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAA_SHESR
AccessionPrimary (citable) accession number: Q0HV71
Entry history
Integrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: October 3, 2006
Last modified: January 25, 2012
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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