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Q0HUD6 (Q0HUD6_SHESR) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Cystathionine beta-lyase EMBL ABI43269.1
EC=4.4.1.8 EMBL ABI43269.1
Gene names
Ordered Locus Names:Shewmr7_2281
OrganismShewanella sp. (strain MR-7) [Complete proteome] [HAMAP] EMBL ABI43269.1
Taxonomic identifier60481 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length399 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL ABI43269.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcellular amino acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular functioncystathionine beta-lyase activity

Inferred from electronic annotation. Source: EC

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q0HUD6 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: 66CA10C137DEF0BF

FASTA39944,117
        10         20         30         40         50         60 
MTDKHQLATQ IVSVGRDKKW TKGVINPPVF RASTIVFDTM EDMRHAAKNK TNGEMFYGRR 

        70         80         90        100        110        120 
GTPTHFAFQA AISELEGGAG TALYPSGAAA ISAALLSFLQ AGDHLLMVDS VYEPTRDLCS 

       130        140        150        160        170        180 
HILAGFNIET TYYDPLIGEG IRELIRPNTK VLFLESPGSI TMEVQDVPTL CRIAHEHGLV 

       190        200        210        220        230        240 
TILDNTWASP INSKPFEMGV DVSIQAATKY IVGHSDVMIG TATANEKHWP QLRERSYLLG 

       250        260        270        280        290        300 
QTTSPDDVYL ATRGLRTLGV RMAQHEKNAL KVANWLKTRP EVDHLRHPAF DTCPGHEFFK 

       310        320        330        340        350        360 
RDFSAANGLF SFVLKQGDQE AVTALVENMQ HFKMGFSWGG YESLILGIFG IEKIRSATQW 

       370        380        390 
DASKPLIRVH IGLEDPDDLI ADLSAGFDRF NAVLAAKTK

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References

[1]"Complete sequence of chromosome 1 of Shewanella sp. MR-7."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000444 Genomic DNA. Translation: ABI43269.1.
RefSeqYP_738326.1. NC_008322.1.

3D structure databases

ProteinModelPortalQ0HUD6.
SMRQ0HUD6. Positions 6-390.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ0HUD6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4257131.
GenomeReviewsGene locus Shewmr7_2281 in contig CP000444_GR.
KEGGshm:Shewmr7_2281.
NMPDRfig|60481.10.peg.2154.
PATRIC23589697. VBISheSp85603_2355.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0626.
HOGENOMHBG754729.
OMAREQSYLM.
ProtClustDBPRK09028.

Family and domain databases

InterProIPR000277. Cys/Met-Metab_PyrdxlP-dep_enz.
IPR006233. Cys_b_lyase_bac.
IPR015424. PyrdxlP-dep_Trfase_major_dom.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
Gene3DG3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit.
G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KOK01760.
PANTHERPTHR11808:SF8. Cys_b_lyase_bac. 1 hit.
PTHR11808. Cys_Met_Meta_PP. 1 hit.
PfamPF01053. Cys_Met_Meta_PP. 1 hit.
[Graphical view]
PIRSFPIRSF001434. CGS. 1 hit.
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITEPS00868. CYS_MET_METAB_PP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0HUD6_SHESR
AccessionPrimary (citable) accession number: Q0HUD6
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: January 25, 2012
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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