Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q0HMN9

- HFQ_SHESM

UniProt

Q0HMN9 - HFQ_SHESM

Protein

RNA-binding protein Hfq

Gene

hfq

Organism
Shewanella sp. (strain MR-4)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs.UniRule annotation

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: InterPro
    2. response to stress Source: UniProtKB-KW

    Keywords - Biological processi

    Stress response

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciSSP60480:GI2N-625-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA-binding protein HfqUniRule annotation
    Gene namesi
    Name:hfqUniRule annotation
    Ordered Locus Names:Shewmr4_0598
    OrganismiShewanella sp. (strain MR-4)
    Taxonomic identifieri60480 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000008079: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 9090RNA-binding protein HfqPRO_0000265189Add
    BLAST

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi60480.Shewmr4_0598.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0HMN9.
    SMRiQ0HMN9. Positions 4-67.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Hfq family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1923.
    HOGENOMiHOG000004931.
    KOiK03666.
    OMAiHQATNAQ.
    OrthoDBiEOG68SW3W.

    Family and domain databases

    HAMAPiMF_00436. Hfq.
    InterProiIPR005001. Hfq.
    IPR010920. LSM_dom.
    IPR001163. Ribonucl_LSM.
    [Graphical view]
    PfamiPF01423. LSM. 1 hit.
    [Graphical view]
    SUPFAMiSSF50182. SSF50182. 1 hit.
    TIGRFAMsiTIGR02383. Hfq. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q0HMN9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV   50
    SQMVYKHAIS TVVPARPFNV AGHQNAQGGY GAQDDMPSGE 90
    Length:90
    Mass (Da):9,873
    Last modified:October 3, 2006 - v1
    Checksum:i92A98E29902BB917
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000446 Genomic DNA. Translation: ABI37678.1.
    RefSeqiYP_732735.1. NC_008321.1.

    Genome annotation databases

    EnsemblBacteriaiABI37678; ABI37678; Shewmr4_0598.
    GeneIDi4251179.
    KEGGishe:Shewmr4_0598.
    PATRICi23577640. VBISheSp133532_0617.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000446 Genomic DNA. Translation: ABI37678.1 .
    RefSeqi YP_732735.1. NC_008321.1.

    3D structure databases

    ProteinModelPortali Q0HMN9.
    SMRi Q0HMN9. Positions 4-67.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 60480.Shewmr4_0598.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI37678 ; ABI37678 ; Shewmr4_0598 .
    GeneIDi 4251179.
    KEGGi she:Shewmr4_0598.
    PATRICi 23577640. VBISheSp133532_0617.

    Phylogenomic databases

    eggNOGi COG1923.
    HOGENOMi HOG000004931.
    KOi K03666.
    OMAi HQATNAQ.
    OrthoDBi EOG68SW3W.

    Enzyme and pathway databases

    BioCyci SSP60480:GI2N-625-MONOMER.

    Family and domain databases

    HAMAPi MF_00436. Hfq.
    InterProi IPR005001. Hfq.
    IPR010920. LSM_dom.
    IPR001163. Ribonucl_LSM.
    [Graphical view ]
    Pfami PF01423. LSM. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50182. SSF50182. 1 hit.
    TIGRFAMsi TIGR02383. Hfq. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MR-4.

    Entry informationi

    Entry nameiHFQ_SHESM
    AccessioniPrimary (citable) accession number: Q0HMN9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 12, 2006
    Last sequence update: October 3, 2006
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3