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Q0HMN9

- HFQ_SHESM

UniProt

Q0HMN9 - HFQ_SHESM

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Protein

RNA-binding protein Hfq

Gene

hfq

Organism
Shewanella sp. (strain MR-4)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs.UniRule annotation

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
  2. response to stress Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Stress response

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciSSP60480:GI2N-625-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein HfqUniRule annotation
Gene namesi
Name:hfqUniRule annotation
Ordered Locus Names:Shewmr4_0598
OrganismiShewanella sp. (strain MR-4)
Taxonomic identifieri60480 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000008079: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9090RNA-binding protein HfqPRO_0000265189Add
BLAST

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi60480.Shewmr4_0598.

Structurei

3D structure databases

ProteinModelPortaliQ0HMN9.
SMRiQ0HMN9. Positions 4-67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Hfq family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1923.
HOGENOMiHOG000004931.
KOiK03666.
OMAiHQATNAQ.
OrthoDBiEOG68SW3W.

Family and domain databases

HAMAPiMF_00436. Hfq.
InterProiIPR005001. Hfq.
IPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
TIGRFAMsiTIGR02383. Hfq. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0HMN9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV
60 70 80 90
SQMVYKHAIS TVVPARPFNV AGHQNAQGGY GAQDDMPSGE
Length:90
Mass (Da):9,873
Last modified:October 3, 2006 - v1
Checksum:i92A98E29902BB917
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000446 Genomic DNA. Translation: ABI37678.1.
RefSeqiYP_732735.1. NC_008321.1.

Genome annotation databases

EnsemblBacteriaiABI37678; ABI37678; Shewmr4_0598.
GeneIDi4251179.
KEGGishe:Shewmr4_0598.
PATRICi23577640. VBISheSp133532_0617.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000446 Genomic DNA. Translation: ABI37678.1 .
RefSeqi YP_732735.1. NC_008321.1.

3D structure databases

ProteinModelPortali Q0HMN9.
SMRi Q0HMN9. Positions 4-67.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 60480.Shewmr4_0598.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI37678 ; ABI37678 ; Shewmr4_0598 .
GeneIDi 4251179.
KEGGi she:Shewmr4_0598.
PATRICi 23577640. VBISheSp133532_0617.

Phylogenomic databases

eggNOGi COG1923.
HOGENOMi HOG000004931.
KOi K03666.
OMAi HQATNAQ.
OrthoDBi EOG68SW3W.

Enzyme and pathway databases

BioCyci SSP60480:GI2N-625-MONOMER.

Family and domain databases

HAMAPi MF_00436. Hfq.
InterProi IPR005001. Hfq.
IPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
[Graphical view ]
Pfami PF01423. LSM. 1 hit.
[Graphical view ]
SUPFAMi SSF50182. SSF50182. 1 hit.
TIGRFAMsi TIGR02383. Hfq. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MR-4.

Entry informationi

Entry nameiHFQ_SHESM
AccessioniPrimary (citable) accession number: Q0HMN9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: October 3, 2006
Last modified: October 1, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3