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Q0HKA6 (Q0HKA6_SHESM) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA topoisomerase RuleBase RU000518
EC=5.99.1.2 RuleBase RU000518
Gene names
Ordered Locus Names:Shewmr4_1433
OrganismShewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI38511.1
Taxonomic identifier60480 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length706 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP-independent breakage of single-stranded DNA, followed by passage and rejoining. RuleBase RU000518 SAAS SAAS013825

Sequence similarities

Belongs to the type IA topoisomerase family. RuleBase RU004206

Contains 1 Toprim domain. SAAS SAAS013825

Sequences

Sequence LengthMass (Da)Tools
Q0HKA6 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: F4AF2BBE363F030F

FASTA70677,388
        10         20         30         40         50         60 
MILYIAEKPS LGRAIADVLP KPHKKGDGFI EDANGNCVSW CVGHLLEQAE PDAYNPEFKS 

        70         80         90        100        110        120 
WKFEHLPIVP EKWQLKPKAA TRSQLTVLKK LVKQADTLVN AGDPDREGQL LVDEVIAYLG 

       130        140        150        160        170        180 
VTGDKLQQTQ RLLISDLNPQ AVKRALSQLR SNREFIPLST SALARSRADW LYGMNMTRAY 

       190        200        210        220        230        240 
TIQGKKVGYQ GVLSVGRVQT PLLGLIVRRD EEIANFQSKP FYEVLAHLVT DKDQAFTAKW 

       250        260        270        280        290        300 
QPSEACLPYM DEEGRVLAKG LAQNVVRRIT DKPAKVTQLS TKDKQQNPPL PYSLSALQID 

       310        320        330        340        350        360 
AAKRFGMSAK DVLDTCQSLY ERHKLITYPR SDSRYLPTEQ HGLASGVLAA ITGGAPELVA 

       370        380        390        400        410        420 
HAEAPNPRLK SKAWDDKKVD AHHAIIPTEK QPNLAGLSQR ERQLYLHIAR QYLAQFYPAY 

       430        440        450        460        470        480 
CYSETAVEVT IEGGLFKTKA KQDKSLGWKQ LFAREENERK DASSAASFAQ GDKDTEEGEY 

       490        500        510        520        530        540 
LGQLPPLTLG QVLHCHQGEL VEKQTQPPKA FTDATLLSAM TGINRYVTDP EIRKILKETD 

       550        560        570        580        590        600 
GLGTEATRAG IIELLFKRGF IQRQGKSIVA TEVGKGLINS LPLSATTPDM TALWEASLNG 

       610        620        630        640        650        660 
ICHKEISYQG FMQPLLGTLN NLIENAGAQL PSALNGLKGQ GFKRAATKKS GYRKAGAKGA 

       670        680        690        700 
GWKKSGTKNA AVGSSAAKTT AAKSTVSTSG TPTTPRRRAS KAPAQA

« Hide

References

[1]"Complete sequence of Shewanella sp. MR-4."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MR-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000446 Genomic DNA. Translation: ABI38511.1.
RefSeqYP_733568.1. NC_008321.1.

3D structure databases

ProteinModelPortalQ0HKA6.
SMRQ0HKA6. Positions 1-626.
ModBaseSearch...

Protein-protein interaction databases

STRING60480.Shewmr4_1433.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI38511; ABI38511; Shewmr4_1433.
GeneID4252011.
KEGGshe:Shewmr4_1433.
PATRIC23579458. VBISheSp133532_1487.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0550.
HOGENOMHOG000086848.
KOK03169.
OMAAANGDCV.
ProtClustDBPRK07726.

Enzyme and pathway databases

BioCycSSP60480:GI2N-1502-MONOMER.

Family and domain databases

Gene3D1.10.460.10. 2 hits.
2.70.20.10. 2 hits.
3.40.50.140. 1 hit.
InterProIPR000380. Topo_IA.
IPR003601. Topo_IA_2.
IPR023406. Topo_IA_AS.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013825. Topo_IA_cen_sub2.
IPR023405. Topo_IA_core_domain.
IPR003602. Topo_IA_DNA-bd.
IPR005738. TopoIII_bac.
IPR006171. Toprim_domain.
[Graphical view]
PANTHERPTHR11390. PTHR11390. 1 hit.
PfamPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
[Graphical view]
PRINTSPR00417. PRTPISMRASEI.
SMARTSM00437. TOP1Ac. 1 hit.
SM00436. TOP1Bc. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMSSF56712. Topo_IA_core. 1 hit.
TIGRFAMsTIGR01056. topB. 1 hit.
PROSITEPS00396. TOPOISOMERASE_I_PROK. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0HKA6_SHESM
AccessionPrimary (citable) accession number: Q0HKA6
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: May 29, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info