Q0HIQ4 (Q0HIQ4_SHESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alpha-N-arabinofuranosidase EMBL ABI39063.1
EC=3.2.1.55 EMBL ABI39063.1

Gene names

Ordered Locus Names:

Shewmr4_1990

Organism

Shewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39063.1

Taxonomic identifier

60480 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	378 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABI39063.1
Molecular function	Glycosidase EMBL ABI39063.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	alpha-N-arabinofuranosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 38	38	Potential EMBL ABI39063.1
	Chain	39 – 378	340	Potential EMBL ABI39063.1		PRO_5000129841

Sequences

	Sequence		Length	Mass (Da)
	Q0HIQ4 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 11990650F4D0ADAA	FASTA	378	42,868
	10 20 30 40 50 60 MDAKHNMDNR QPNLSVFRRL PLTCGLLAAL AVPLAQAVPV LEISRAQSHS ATVQTLDANA 70 80 90 100 110 120 PFIERRADPW VIRDDDGSYY FIASVPEFDR IELRHAKTID GLRQATPKTL WHKHENGPMS 130 140 150 160 170 180 IDIWAPELHK IDGRWYIYFA ASNKDVRFHN RMFVLGLEGD SPMTGQWQEL GKLQSAQDAF 190 200 210 220 230 240 SLDATSFSLK GERYFIWAQQ DKAKRYNTGL VIAKMLSPTQ LSDNETIISE PLLDWERLGF 250 260 270 280 290 300 KVNEGAAVLV KNGKVFVTYS ASATDDRYAM GLLWADENAD LLDPKSWHKS PSPVFTTEPS 310 320 330 340 350 360 LNRFGPGHNS FVLAEDGKTE LMFYHARNYL ELQGTPLTDG NRHTYYRAIR WSADGFPVFD 370 NPQSDSQTLN QQDTQSRE

References

[1]

"Complete sequence of Shewanella sp. MR-4." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MR-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000446 Genomic DNA. Translation: ABI39063.1.
RefSeq	YP_734120.1. NC_008321.1.
3D structure databases
ProteinModelPortal	Q0HIQ4.
SMR	Q0HIQ4. Positions 61-368.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0HIQ4.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4252563.
GenomeReviews	Gene locus Shewmr4_1990 in contig CP000446_GR.
KEGG	she:Shewmr4_1990.
PATRIC	23580664. VBISheSp133532_2071.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3940.
HOGENOM	HBG348165.
OMA	EFDRIEL.
ProtClustDB	CLSK2398341.
Family and domain databases
InterPro	IPR016828. Alpha-L-arabinofuranosidase. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
KO	K01209.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
PIRSF	PIRSF025414. Alpha-L-arabinofuranosidase. 1 hit.
SUPFAM	SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0HIQ4_SHESM

Accession

Primary (citable) accession number: Q0HIQ4

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)