Q0HIP9 (Q0HIP9_SHESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Arabinan endo-1,5-alpha-L-arabinosidase EMBL ABI39068.1
EC=3.2.1.99 EMBL ABI39068.1

Gene names

Ordered Locus Names:

Shewmr4_1995

Organism

Shewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39068.1

Taxonomic identifier

60480 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	355 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABI39068.1
Molecular function	Glycosidase EMBL ABI39068.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arabinan endo-1,5-alpha-L-arabinosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 36	36	Potential EMBL ABI39068.1
	Chain	37 – 355	319	Potential EMBL ABI39068.1		PRO_5000129843

Sequences

	Sequence		Length	Mass (Da)
	Q0HIP9 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: F371C3A3031C209B	FASTA	355	39,580
	10 20 30 40 50 60 MPAMRVTPKT ALKRHLKMLN CALLGVLGTL GQASAKQVSI HDPVMAKEAG QYYLFSTGPG 70 80 90 100 110 120 ITYYSSKDKI HWELAGRVFE TEPSWAKDVA PEFNGHLWAP DIIEHNGLFY LYYSVSAFGK 130 140 150 160 170 180 NTSAIGVTVN KTLDKNSKEY QWTDKGIVIQ SVPNRDAWNA IDPNIIVDEQ GTPWMSFGSF 190 200 210 220 230 240 WQGLKLVKLN PDFISISKPE EWHTLAKLER PALLGETEPG PAEIEAPFIY KKDDYYYLFV 250 260 270 280 290 300 SYGLCCRGDD STYHLAVGRT KTVTGPYLDK EGKDMAQGGG SVLLHGTKAW PGLGHNSVYA 310 320 330 340 350 FDGKDYLVFH AYESADNGLQ KLKMAELSWR QGWPEVDPKA LNQYQSVLVA PEGTK

References

[1]

"Complete sequence of Shewanella sp. MR-4." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MR-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000446 Genomic DNA. Translation: ABI39068.1.
RefSeq	YP_734125.1. NC_008321.1.
3D structure databases
ProteinModelPortal	Q0HIP9.
SMR	Q0HIP9. Positions 35-346.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0HIP9.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4252568.
GenomeReviews	Gene locus Shewmr4_1995 in contig CP000446_GR.
KEGG	she:Shewmr4_1995.
PATRIC	23580674. VBISheSp133532_2076.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3507.
HOGENOM	HBG346382.
OMA	NIIVDEQ.
ProtClustDB	CLSK845535.
Family and domain databases
InterPro	IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. IPR016840. Glyco_hydro_43_endo_a_Ara-ase. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
KO	K06113.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
PIRSF	PIRSF026534. Endo_alpha-L-arabinosidase. 1 hit.
SUPFAM	SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0HIP9_SHESM

Accession

Primary (citable) accession number: Q0HIP9

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)