Q0HIP5 (Q0HIP5_SHESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase, family 43 EMBL ABI39072.1

Gene names

Ordered Locus Names:

Shewmr4_1999

Organism

Shewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39072.1

Taxonomic identifier

60480 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	1121 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABI39072.1
Molecular function	Hydrolase EMBL ABI39072.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ABI39072.1
	Chain	22 – 1121	1100	Potential EMBL ABI39072.1		PRO_5000129847

Sequences

	Sequence		Length	Mass (Da)
	Q0HIP5 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 20B877145A384F0A	FASTA	1,121	120,725
	10 20 30 40 50 60 MVLKRSFVSA SLIMALASCG GDDSSYSAND TNTFTPPAPV TSADPTIAGE VSYKNAVVHD 70 80 90 100 110 120 PSIIKDTDGT YYVFGSHLAV ASSTDLMNWT QIASDGAAKS SLFNTYESEI AEGTAWTGGF 130 140 150 160 170 180 VGSWAPDVIK LADGKYHFYY DFCGGPDKID CVSRSYLGMA TSDNILGPYV NQGLILKSGH 190 200 210 220 230 240 EGAENPGANG QIYDGFVDPN AIDPAVFYDK DGGLWMTYGS YSGGIWVMQL DPATGKPLAD 250 260 270 280 290 300 QGYGTKIMGG NYSAIEGSYV IYSPESEYYY MFTSFGGFAQ KDGYNIRISR SKNPNGPYVD 310 320 330 340 350 360 AAGLDMIGAT AAGNIADYGV KLMGGFQFVA HPGDVGHDHG YLSPGHNSAF YDAQTGKYFL 370 380 390 400 410 420 VFHTRFPDTG EGHSVRVHEL FLNSDGWLVA SPQRYAPING DNIVDEIDVT GDYQFINHAK 430 440 450 460 470 480 NINTAAHTSL HIKLSRTWTN KGSVSGDVTG TYQQGDDNQI TLMLDNLGTF EGVLAWQWDP 490 500 510 520 530 540 EQNKLMPTFS AISNDGVSIW GVKLTDNTTE EILSASANGI SLPTEATEGK IALPIQGTRG 550 560 570 580 590 600 STIEWQSSDE SVIRADGTII RPNVGEGDKV VTLTATIMVN GKKVTKTFQI TVFAHKTYNR 610 620 630 640 650 660 IAQYSFENNL KDSLGLFGDG QPTGDRIFKA GDTIGYATGF EGQALSLDGA HGVLLPSGII 670 680 690 700 710 720 SSYEYTVSFW ASPAVITGFT TAFFGAVNEQ TAEDGSKFSN TWVSLLPQGW DGNTMFWSHN 730 740 750 760 770 780 IDTSGSSVLE TWFDGVTGER IAENTWSHLA FSVNKGLVKV FINGVERFSS GNLANYFTGA 790 800 810 820 830 840 QGVFGLGVNY WDVPYNGLID ELKIYEAALT AEEVKALDID KLADSELLSS ATAILELGDL 850 860 870 880 890 900 SAVRENIELP VTGPYASAIT WVSSDPTIID TRGTVNQPGR EETDKVVTLT ATLKLGQATQ 910 920 930 940 950 960 TKVFTATVKS KAPPTPVAVY SFEDNLNDST ANFGAGTVVG NLIGVEGGKI SYVDGAVGKA 970 980 990 1000 1010 1020 AVFDGASGVV LPNNLIKDYT YSVSMWLNPE QLNKYTTALF GYATDSSWTS VLPGGQNDYE 1030 1040 1050 1060 1070 1080 RMVLWSGTAW YDGRTGFVMP KSQWTHLAYT VNGGDVKVYI NGELKFTGAN FPNIFSVPTT 1090 1100 1110 1120 KFAVGVNFWD TPFKGAIDEI KFYDEAITEQ DVADLFGESN Q

References

[1]

"Complete sequence of Shewanella sp. MR-4." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MR-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000446 Genomic DNA. Translation: ABI39072.1.
RefSeq	YP_734129.1. NC_008321.1.
3D structure databases
ProteinModelPortal	Q0HIP5.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0HIP5.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4252572.
GenomeReviews	Gene locus Shewmr4_1999 in contig CP000446_GR.
KEGG	she:Shewmr4_1999.
PATRIC	23580682. VBISheSp133532_2080.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3507.
HOGENOM	HBG402284.
OMA	GWDGNTM.
ProtClustDB	CLSK845562.
Family and domain databases
InterPro	IPR008985. ConA-like_lec_gl. IPR013320. ConA-like_subgrp. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.60.120.200. ConA_like_subgrp. 2 hits. G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SUPFAM	SSF49899. ConA_like_lec_gl. 2 hits. SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0HIP5_SHESM

Accession

Primary (citable) accession number: Q0HIP5

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)