Q0HI53 (Q0HI53_SHESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABI39264.1

Gene names

Ordered Locus Names:

Shewmr4_2191

Organism

Shewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39264.1

Taxonomic identifier

60480 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	302 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABI39264.1
Molecular function	Ligase EMBL ABI39264.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 35	35	Potential EMBL ABI39264.1
	Chain	36 – 302	267	Potential EMBL ABI39264.1		PRO_5000129888

Sequences

	Sequence		Length	Mass (Da)
	Q0HI53 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 457E743E0A4D8679	FASTA	302	33,762
	10 20 30 40 50 60 MALTTRSQFL TSTLVRCLVF FYGIFGLLMA VSYANPQAPK IQLATEYSRE NSAHISDFLV 70 80 90 100 110 120 SEKLDGVRGY WDGKRLVTRQ GNPILAPSWF TADFPTTPMD GELWLGRGQF EAISGIIRQM 130 140 150 160 170 180 SPKESDWQNV RFMVFDLPEA QGSFETRYQQ MQTLLAGKSI YLQVIEQVRV ESIEALYQKL 190 200 210 220 230 240 DALVAQGAEG LILHRRSALY TPGRNPNVMK LKPYLDAEAK VIGHIAGKGQ FAGQMGALRV 250 260 270 280 290 300 QTPDGRVFSI GTGFTLAERQ HPPAIGTLIT YKYLGLTVNG LPRFASYLRI RADMPAEDKD KE

References

[1]

"Complete sequence of Shewanella sp. MR-4." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MR-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000446 Genomic DNA. Translation: ABI39264.1.
RefSeq	YP_734321.1. NC_008321.1.
3D structure databases
ProteinModelPortal	Q0HI53.
ModBase	Search...
Protein-protein interaction databases
STRING	60480.Shewmr4_2191.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI39264; ABI39264; Shewmr4_2191.
GeneID	4252764.
KEGG	she:Shewmr4_2191.
PATRIC	23581104. VBISheSp133532_2278.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0HI53_SHESM

Accession

Primary (citable) accession number: Q0HI53

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	May 1, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)