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Q0HI53 (Q0HI53_SHESM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Shewmr4_2191 EMBL ABI39264.1
OrganismShewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39264.1
Taxonomic identifier60480 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length302 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABI39264.1
   Molecular functionLigase EMBL ABI39264.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3535 Potential EMBL ABI39264.1
Chain36 – 302267 Potential EMBL ABI39264.1
PRO_5000129888

Sequences

Sequence LengthMass (Da)Tools
Q0HI53 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: 457E743E0A4D8679

FASTA30233,762
        10         20         30         40         50         60 
MALTTRSQFL TSTLVRCLVF FYGIFGLLMA VSYANPQAPK IQLATEYSRE NSAHISDFLV 

        70         80         90        100        110        120 
SEKLDGVRGY WDGKRLVTRQ GNPILAPSWF TADFPTTPMD GELWLGRGQF EAISGIIRQM 

       130        140        150        160        170        180 
SPKESDWQNV RFMVFDLPEA QGSFETRYQQ MQTLLAGKSI YLQVIEQVRV ESIEALYQKL 

       190        200        210        220        230        240 
DALVAQGAEG LILHRRSALY TPGRNPNVMK LKPYLDAEAK VIGHIAGKGQ FAGQMGALRV 

       250        260        270        280        290        300 
QTPDGRVFSI GTGFTLAERQ HPPAIGTLIT YKYLGLTVNG LPRFASYLRI RADMPAEDKD 


KE 

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References

[1]"Complete sequence of Shewanella sp. MR-4."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MR-4 EMBL ABI39264.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000446 Genomic DNA. Translation: ABI39264.1.
RefSeqYP_734321.1. NC_008321.1.

3D structure databases

ProteinModelPortalQ0HI53.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING60480.Shewmr4_2191.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI39264; ABI39264; Shewmr4_2191.
GeneID4252764.
KEGGshe:Shewmr4_2191.
PATRIC23581104. VBISheSp133532_2278.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAVRGYWDG.
OrthoDBEOG60919Q.
ProtClustDBPRK09125.

Enzyme and pathway databases

BioCycSSP60480:GI2N-2293-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ0HI53_SHESM
AccessionPrimary (citable) accession number: Q0HI53
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: April 16, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)