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Q0HI53

- Q0HI53_SHESM

UniProt

Q0HI53 - Q0HI53_SHESM

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Shewmr4_2191

Organism
Shewanella sp. (strain MR-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP60480:GI2N-2293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Shewmr4_2191Imported
OrganismiShewanella sp. (strain MR-4)Imported
Taxonomic identifieri60480 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000008079: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3535 PotentialImportedAdd
BLAST
Chaini36 – 302267 PotentialImportedPRO_5000129888Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi60480.Shewmr4_2191.

Structurei

3D structure databases

ProteinModelPortaliQ0HI53.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0HI53-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MALTTRSQFL TSTLVRCLVF FYGIFGLLMA VSYANPQAPK IQLATEYSRE
60 70 80 90 100
NSAHISDFLV SEKLDGVRGY WDGKRLVTRQ GNPILAPSWF TADFPTTPMD
110 120 130 140 150
GELWLGRGQF EAISGIIRQM SPKESDWQNV RFMVFDLPEA QGSFETRYQQ
160 170 180 190 200
MQTLLAGKSI YLQVIEQVRV ESIEALYQKL DALVAQGAEG LILHRRSALY
210 220 230 240 250
TPGRNPNVMK LKPYLDAEAK VIGHIAGKGQ FAGQMGALRV QTPDGRVFSI
260 270 280 290 300
GTGFTLAERQ HPPAIGTLIT YKYLGLTVNG LPRFASYLRI RADMPAEDKD

KE
Length:302
Mass (Da):33,762
Last modified:October 3, 2006 - v1
Checksum:i457E743E0A4D8679
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000446 Genomic DNA. Translation: ABI39264.1.
RefSeqiWP_011622954.1. NC_008321.1.
YP_734321.1. NC_008321.1.

Genome annotation databases

EnsemblBacteriaiABI39264; ABI39264; Shewmr4_2191.
GeneIDi4252764.
KEGGishe:Shewmr4_2191.
PATRICi23581104. VBISheSp133532_2278.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000446 Genomic DNA. Translation: ABI39264.1 .
RefSeqi WP_011622954.1. NC_008321.1.
YP_734321.1. NC_008321.1.

3D structure databases

ProteinModelPortali Q0HI53.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 60480.Shewmr4_2191.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI39264 ; ABI39264 ; Shewmr4_2191 .
GeneIDi 4252764.
KEGGi she:Shewmr4_2191.
PATRICi 23581104. VBISheSp133532_2278.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci SSP60480:GI2N-2293-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MR-4Imported.

Entry informationi

Entry nameiQ0HI53_SHESM
AccessioniPrimary (citable) accession number: Q0HI53
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: October 29, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3