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Q0HI53

- Q0HI53_SHESM

UniProt

Q0HI53 - Q0HI53_SHESM

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Shewmr4_2191

Organism
Shewanella sp. (strain MR-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (03 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSSP60480:GI2N-2293-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Shewmr4_2191Imported
    OrganismiShewanella sp. (strain MR-4)Imported
    Taxonomic identifieri60480 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000008079: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3535 PotentialImportedAdd
    BLAST
    Chaini36 – 302267 PotentialImportedPRO_5000129888Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi60480.Shewmr4_2191.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0HI53.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q0HI53-1 [UniParc]FASTAAdd to Basket

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    MALTTRSQFL TSTLVRCLVF FYGIFGLLMA VSYANPQAPK IQLATEYSRE    50
    NSAHISDFLV SEKLDGVRGY WDGKRLVTRQ GNPILAPSWF TADFPTTPMD 100
    GELWLGRGQF EAISGIIRQM SPKESDWQNV RFMVFDLPEA QGSFETRYQQ 150
    MQTLLAGKSI YLQVIEQVRV ESIEALYQKL DALVAQGAEG LILHRRSALY 200
    TPGRNPNVMK LKPYLDAEAK VIGHIAGKGQ FAGQMGALRV QTPDGRVFSI 250
    GTGFTLAERQ HPPAIGTLIT YKYLGLTVNG LPRFASYLRI RADMPAEDKD 300
    KE 302
    Length:302
    Mass (Da):33,762
    Last modified:October 3, 2006 - v1
    Checksum:i457E743E0A4D8679
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000446 Genomic DNA. Translation: ABI39264.1.
    RefSeqiWP_011622954.1. NC_008321.1.
    YP_734321.1. NC_008321.1.

    Genome annotation databases

    EnsemblBacteriaiABI39264; ABI39264; Shewmr4_2191.
    GeneIDi4252764.
    KEGGishe:Shewmr4_2191.
    PATRICi23581104. VBISheSp133532_2278.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000446 Genomic DNA. Translation: ABI39264.1 .
    RefSeqi WP_011622954.1. NC_008321.1.
    YP_734321.1. NC_008321.1.

    3D structure databases

    ProteinModelPortali Q0HI53.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 60480.Shewmr4_2191.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI39264 ; ABI39264 ; Shewmr4_2191 .
    GeneIDi 4252764.
    KEGGi she:Shewmr4_2191.
    PATRICi 23581104. VBISheSp133532_2278.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci SSP60480:GI2N-2293-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MR-4Imported.

    Entry informationi

    Entry nameiQ0HI53_SHESM
    AccessioniPrimary (citable) accession number: Q0HI53
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 3, 2006
    Last sequence update: October 3, 2006
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3