Q0HI40 (Q0HI40_SHESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase EMBL ABI39277.1
EC=4.4.1.8 EMBL ABI39277.1

Gene names

Ordered Locus Names:

Shewmr4_2204

Organism

Shewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39277.1

Taxonomic identifier

60480 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	399 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ABI39277.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0HI40 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 48ACE62882CB90A9	FASTA	399	44,075
	10 20 30 40 50 60 MTDKHQLATQ IVSVGRDKKW TKGVINPPVF RASTIVFDTM EDMRHAAKNK TNGEMFYGRR 70 80 90 100 110 120 GTPTHFAFQA AISELEGGVG TALYPSGAAA ISAALLSFLQ AGDHLLMVDS VYEPTRDLCS 130 140 150 160 170 180 HILAGFNIET TYYDPLIGEG IRALIRPNTK VLFLESPGSI TMEVQDVPTL CRIAHEHGMV 190 200 210 220 230 240 TILDNTWASP INSKPFEMGV DVSIQAATKY IVGHSDVMIG TATANEKHWP QLRERSYLLG 250 260 270 280 290 300 QTTSPDDVYL ATRGLRTLGV RMAQHEKNAL KVANWLKTRP EVDHLRHPAF DTCPGHEFFK 310 320 330 340 350 360 RDFSAANGLF SFVLKQGDQE AVTALVENMQ HFKMGFSWGG YESLILGIFG IEKIRSATQW 370 380 390 DASKPLIRVH IGLEDPDDLI ADLSAGFDRF NAVLAAKAK

References

[1]

"Complete sequence of Shewanella sp. MR-4." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MR-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000446 Genomic DNA. Translation: ABI39277.1.
RefSeq	YP_734334.1. NC_008321.1.
3D structure databases
ProteinModelPortal	Q0HI40.
SMR	Q0HI40. Positions 6-390.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0HI40.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4252777.
GenomeReviews	Gene locus Shewmr4_2204 in contig CP000446_GR.
KEGG	she:Shewmr4_2204.
PATRIC	23581130. VBISheSp133532_2291.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0626.
HOGENOM	HBG754729.
OMA	REQSYLM.
ProtClustDB	PRK09028.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0HI40_SHESM

Accession

Primary (citable) accession number: Q0HI40

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)