Q0HG34 (Q0HG34_SHESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ABI39983.1
EC=2.6.1.19 EMBL ABI39983.1

Gene names

Ordered Locus Names:

Shewmr4_2912

Organism

Shewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI39983.1

Taxonomic identifier

60480 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	425 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ABI39983.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0HG34 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 58154059F9FFE92D	FASTA	425	44,713
	10 20 30 40 50 60 MSTTNDSLMA RRQAAVAGGV GQIHPVFTAR AENATVWDVE GREFIDFAGG IAVLNTGHLH 70 80 90 100 110 120 PKVKAAVAAQ LEDFSHTCFM VLGYESYIQV CEKLNQLVPG DFAKKTALFT SGSEAVENAV 130 140 150 160 170 180 KVARAYTKRA GVIAFTSGYH GRTMAALALT GKVAPYSKGM GLMSANVFRA EFPCALHGVS 190 200 210 220 230 240 DDDAMASIER IFKNDAEPSD IAAIILEPVQ GEGGFYAASP AFMQRLRALC DREGIMLIAD 250 260 270 280 290 300 EVQTGAGRTG TFFAMEQMGV SADITTFAKS IAGGFPLSGI TGKAEVMDAI GPGGLGGTYG 310 320 330 340 350 360 GNPLACAAAL AVLEVFEEEK LLERANAIGE RIKSALNTMQ VEHPQIADVR GLGAMIAIEL 370 380 390 400 410 420 MEDGKPAPQY CAQILAEARN RGLILLSCGT YGNVLRILVP LTVPDEQLGA GLGILKACFD AVLKG

References

[1]

"Complete sequence of Shewanella sp. MR-4." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MR-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000446 Genomic DNA. Translation: ABI39983.1.
RefSeq	YP_735040.1. NC_008321.1.
3D structure databases
ProteinModelPortal	Q0HG34.
SMR	Q0HG34. Positions 4-420.
ModBase	Search...
Protein-protein interaction databases
STRING	60480.Shewmr4_2912.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI39983; ABI39983; Shewmr4_2912.
GeneID	4253483.
KEGG	she:Shewmr4_2912.
PATRIC	23582608. VBISheSp133532_3018.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	ITGRAQV.
ProtClustDB	PRK08088.
Enzyme and pathway databases
BioCyc	SSP60480:GI2N-3030-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0HG34_SHESM

Accession

Primary (citable) accession number: Q0HG34

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2006
Last sequence update:	October 3, 2006
Last modified:	May 29, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)