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Q0HFQ9 (Q0HFQ9_SHESM) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 3 HAMAP MF_00163
Short name=PDF 3 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 3 HAMAP MF_00163
Gene names
Name:def3 HAMAP MF_00163
Ordered Locus Names:Shewmr4_3037
OrganismShewanella sp. (strain MR-4) [Complete proteome] [HAMAP] EMBL ABI40108.1
Taxonomic identifier60480 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length181 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1521 By similarity HAMAP MF_00163
Metal binding1091Iron By similarity HAMAP MF_00163
Metal binding1511Iron By similarity HAMAP MF_00163
Metal binding1551Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q0HFQ9 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: 8989C32A6CEB8CB5

FASTA18119,921
        10         20         30         40         50         60 
MFKDAISPTP SQPLPIAVVG EAILKEQAVE VRDFDTALSQ LAEQMAVSMV AAKGVGIAAP 

        70         80         90        100        110        120 
QVHSPLALFI MASRPNERYP DAPLMDPVVV VNPEILSASA DLVSGEEGCL SVPGQRFTIW 

       130        140        150        160        170        180 
RHQQIVVRYQ NLAGQWQRSE LTGFIARIFQ HEFDHLQGIT LLERSQMPEQ KHMALEGKPQ 


A

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References

[1]"Complete sequence of Shewanella sp. MR-4."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Nealson K., Konstantinidis K., Klappenbach J., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MR-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000446 Genomic DNA. Translation: ABI40108.1.
RefSeqYP_735165.1. NC_008321.1.

3D structure databases

ProteinModelPortalQ0HFQ9.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ0HFQ9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4253608.
GenomeReviewsGene locus Shewmr4_3037 in contig CP000446_GR.
KEGGshe:Shewmr4_3037.
PATRIC23582882. VBISheSp133532_3149.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAIRYEGFD.
ProtClustDBCLSK906069.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ0HFQ9_SHESM
AccessionPrimary (citable) accession number: Q0HFQ9
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: December 14, 2011
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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