Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q0H8C5 (NSP1N_ROTB2) Reviewed, UniProtKB/Swiss-Prot

Last modified October 16, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length395 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 DRBM (double-stranded RNA-binding) domain.

Ontologies

Keywords
   LigandRNA-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 395395Non-structural protein 1
PRO_0000369858

Regions

Domain328 – 39568DRBM
Motif320 – 3278Putative autoproteolytic cleavage motif Potential

Sequences

Sequence LengthMass (Da)Tools
Q0H8C5 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: C30290DE0D877C5E

FASTA39545,875
        10         20         30         40         50         60 
MMSIQRATQI NRQFDYMSIK ELWMAKFPLH KPGDCLDMFK NGNYTGLTME CIQRTKASKK 

        70         80         90        100        110        120 
NTIFHIKSDF NSTDYDEPPI SGFKMFTQHC CQRIDEHFCG ALHPVISNIE FEQNQLRTRP 

       130        140        150        160        170        180 
QVASEFNLFI PCGIKNLKIE SGEDPTWIVG TKFRKCMCLK PVMVAATIIG TPVNKNLITF 

       190        200        210        220        230        240 
CSSDYIQVIV NRNREGSCGI CMGNTSTYEA CGNWTNETWG EEFSLDLKLC YKCTPVAFIF 

       250        260        270        280        290        300 
SLMMSTGHKP YVSKRQFEEN RRKWERVLNY KICEENLDSH LACANHENVY KSIKKYEFFD 

       310        320        330        340        350        360 
SIWVYHLANS SWVRDLTREC IESNPGPNYI QLLNEHSQRY GFIQPTYEII AVVSDGHHSY 

       370        380        390 
QCTCYYKDTK TQSIGPSKKN AKHQAAEQMF RHQCF 

« Hide

References

[1]"Genetic analysis of an ADRV-N-like novel rotavirus strain B219 detected in a sporadic case of adult diarrhea in Bangladesh."
Alam M.M., Kobayashi N., Ishino M., Ahmed M.S., Ahmed M.U., Paul S.K., Muzumdar B.K., Hussain Z., Wang Y.H., Naik T.N.
Arch. Virol. 152:199-208(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ168032 Genomic RNA. Translation: ABA60392.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.30.160.20. 1 hit.
InterProIPR014720. dsRNA-bd_dom.
[Graphical view]
PfamPF00035. dsrm. 1 hit.
[Graphical view]
SMARTSM00358. DSRM. 1 hit.
[Graphical view]
PROSITEPS50137. DS_RBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNSP1N_ROTB2
AccessionPrimary (citable) accession number: Q0H8C5
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: October 3, 2006
Last modified: October 16, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families