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Protein
Submitted name:

Uncharacterized protein

Gene

R2601_13739

Organism
Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:R2601_13739Imported
OrganismiPelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601)Imported
Taxonomic identifieri314265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePelagibaca
Proteomesi
  • UP000006230 Componenti: Unassembled WGS sequence

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2419HelicalSequence analysisAdd
BLAST
Transmembranei53 – 7624HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi314265.R2601_13739.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG41060AV. Bacteria.
ENOG41128GD. LUCA.

Family and domain databases

InterProiIPR009935. DUF1467.
[Graphical view]
PfamiPF07330. DUF1467. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0FRG6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLTSALVLY AVIWFMTFLI VIPFRLETQG DRGEVVEGTH ASSPEVHNLK
60 70 80 90
RKALITTLIA LVLWAVIAGI IISGWITVRE LDSWMFNRMG PPSGL
Length:95
Mass (Da):10,538
Last modified:October 17, 2006 - v1
Checksum:iD4C2CE10E575F32F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AATQ01000011 Genomic DNA. Translation: EAU46888.1.
RefSeqiWP_007795086.1. NZ_DS022276.1.

Genome annotation databases

EnsemblBacteriaiEAU46888; EAU46888; R2601_13739.
PATRICi28144712. VBIRosSp73948_1062.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AATQ01000011 Genomic DNA. Translation: EAU46888.1.
RefSeqiWP_007795086.1. NZ_DS022276.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi314265.R2601_13739.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEAU46888; EAU46888; R2601_13739.
PATRICi28144712. VBIRosSp73948_1062.

Phylogenomic databases

eggNOGiENOG41060AV. Bacteria.
ENOG41128GD. LUCA.

Family and domain databases

InterProiIPR009935. DUF1467.
[Graphical view]
PfamiPF07330. DUF1467. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera."
    Thrash J.C., Cho J.C., Ferriera S., Johnson J., Vergin K.L., Giovannoni S.J.
    J. Bacteriol. 192:5552-5553(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 13377 / KCTC 12554 / HTCC2601Imported.

Entry informationi

Entry nameiQ0FRG6_PELBH
AccessioniPrimary (citable) accession number: Q0FRG6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: January 20, 2016
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.