Mandelate racemase/muconate lactonizing enzyme - Pelagibaca bermudensis HTCC2601

Preferred order of sections

Names and origin

Protein names

Submitted name:
Mandelate racemase/muconate lactonizing enzyme EMBL EAU46159.1

Gene names

ORF Names:

R2601_01638 EMBL EAU46159.1

Organism

Pelagibaca bermudensis HTCC2601 EMBL EAU46159.1

Taxonomic identifier

314265 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Pelagibaca ›

Protein attributes

Sequence length	367 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Ligand	Magnesium PDB 2PMQ Metal-binding SAAS SAAS013342 PDB 2PMQ
Technical term	3D-structure PDB 2PMQ PDB 4H2H
Gene Ontology (GO)
Molecular_function	catalytic activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

193

1

Magnesium PDB 2PMQ

Metal binding

218

1

Magnesium PDB 2PMQ

Metal binding

241

1

Magnesium PDB 2PMQ

Sequences

Sequence

Length

Mass (Da)

Tools

Q0FPQ4 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: 6377860F2A17B87E
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FASTA

367

39,558

        10         20         30         40         50         60 
MKIAEIQLFQ HDLPVVNGPY RIASGDVWSL TTTIVKIIAE DGTIGWGETC PVGPTYAEAH 

        70         80         90        100        110        120 
AGGALAALEV LASGLAGAEA LPLPLHTRMD SLLCGHNYAK SALDIAVHDL WGKRLGVPVH 

       130        140        150        160        170        180 
ELLGGALTDS VSSYYSLGVM EPDEAARQAL EKQREGYSRL QVKLGARPIE IDIEAIRKVW 

       190        200        210        220        230        240 
EAVRGTGIAL AADGNRGWTT RDALRFSREC PDIPFVMEQP CNSFEDLEAI RPLCHHALYM 

       250        260        270        280        290        300 
DEDGTSLNTV ITAAATSLVD GFGMKVSRIG GLQHMRAFRD FCAARNLPHT CDDAWGGDIV 

       310        320        330        340        350        360 
SAACTHIAST VLPRLMEGAW LAQPYVAEHY DAENGVRIEG GRIRVPQGPG LGLTIDPERF 


GPPLFSA

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References

[1]	"Crystal structure of a mandelate racemase/muconate lactonizing enzyme from Roseovarius sp. HTCC2601." Bonanno J.B., Rutter M., Bain K.T., Lau C., Sridhar V., Smith D., Wasserman S., Sauder J.M., Burley S.K., Almo S.C. Submitted (APR-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.72 ANGSTROMS) OF 2-367 IN COMPLEX WITH MAGNESIUM.
[2]	"Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera." Thrash J.C., Cho J.C., Ferriera S., Johnson J., Vergin K.L., Giovannoni S.J. J. Bacteriol. 192:5552-5553(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: HTCC2601 EMBL EAU46159.1.
[3]	"Crystal structure of an enolase (mandalate racemase subgroup, target EFI-502101) from Pelagibaca bermudensis htcc2601, with bound mg and l-4-hydroxyproline betaine (betonicine)." Enzyme Function Initiative (EFI) Vetting M.W., Morisco L.L., Wasserman S.R., Sojitra S., Imker H.J., Gerlt J.A., Almo S.C. Submitted (SEP-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS) OF 2-367.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AATQ01000017 Genomic DNA. Translation: EAU46159.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2PMQ	X-ray	1.72	A/B	2-367	[»]
4H2H	X-ray	1.70	A/B/C/D/E/F/G/H	2-367	[»]

ProteinModelPortal

Q0FPQ4.

SMR

Q0FPQ4. Positions 2-367.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EAU46159; EAU46159; R2601_01638.

PATRIC

28150214. VBIRosSp73948_3937.

Family and domain databases

InterPro

IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N.
IPR001354. MR_MLE.
[Graphical view]

PANTHER

PTHR13794. PTHR13794. 1 hit.

Pfam

PF01188. MR_MLE. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]

SMART

SM00922. MR_MLE. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q0FPQ4.

Entry information

Entry name

Q0FPQ4_9RHOB

Accession

Primary (citable) accession number: Q0FPQ4

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	April 3, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)