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Protein

Superoxide dismutase [Cu-Zn]

Gene

Os03g0219200

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. copper ion binding Source: GO_Central
  2. superoxide dismutase activity Source: GO_Central
  3. zinc ion binding Source: GO_Central

GO - Biological processi

  1. removal of superoxide radicals Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:Os03g0219200Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763 Componenti: Chromosome 3

Organism-specific databases

GrameneiQ0DTX5.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: GO_Central
  2. peroxisome Source: EnsemblPlants/Gramene
  3. vacuole Source: EnsemblPlants/Gramene
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ0DTX5.

Expressioni

Gene expression databases

ExpressionAtlasiQ0DTX5. baseline.

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

InParanoidiQ0DTX5.
KOiK04565.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q0DTX5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GKAGGLKGVA LIGGAGGNSA VAGALHFFQD PSTGYTEVRG RVTGLAPGLH
60 70 80 90 100
GFHIHSFGDT TNGCNSTGPH FNPHNKSHGA PSDDERHVGD LGNIVANKDG
110 120 130 140 150
VADIFIKDLQ ISLSGPHSIL GRAVVVHADS DDLGRGGHEL SKTTGNAGAR
160
IGCGIIGLRS AV
Length:162
Mass (Da):16,315
Last modified:October 17, 2006 - v1
Checksum:iA96DE3BB6CA3F4D2
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008209 Genomic DNA. Translation: BAF11313.1.
RefSeqiNP_001049399.1. NM_001055934.1.
UniGeneiOs.4727.

Genome annotation databases

EnsemblPlantsiOS03T0219200-01; OS03T0219200-01; OS03G0219200.
GeneIDi4332082.
KEGGiosa:4332082.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008209 Genomic DNA. Translation: BAF11313.1.
RefSeqiNP_001049399.1. NM_001055934.1.
UniGeneiOs.4727.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ0DTX5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0219200-01; OS03T0219200-01; OS03G0219200.
GeneIDi4332082.
KEGGiosa:4332082.

Organism-specific databases

GrameneiQ0DTX5.

Phylogenomic databases

InParanoidiQ0DTX5.
KOiK04565.

Gene expression databases

ExpressionAtlasiQ0DTX5. baseline.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. NipponbareImported.

Entry informationi

Entry nameiQ0DTX5_ORYSJ
AccessioniPrimary (citable) accession number: Q0DTX5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: April 1, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.