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Protein

Cytochrome c

Gene

CC-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei23Heme (covalent)1
Binding sitei26Heme (covalent)1
Metal bindingi27Iron (heme axial ligand)1
Metal bindingi89Iron (heme axial ligand)1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processElectron transport, Respiratory chain, Transport
LigandHeme, Iron, Metal-binding

Enzyme and pathway databases

ReactomeiR-OSA-111457 Release of apoptotic factors from the mitochondria
R-OSA-3299685 Detoxification of Reactive Oxygen Species

Names & Taxonomyi

Protein namesi
Recommended name:
Cytochrome c
Gene namesi
Name:CC-1
Ordered Locus Names:Os05g0420600, LOC_Os05g34770
ORF Names:OsJ_017825, OsJ_18585Imported, OSJNBb0092E21.3, P0426G01.18
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001083032 – 112Cytochrome cAdd BLAST111

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanine1 Publication1
Modified residuei81N6,N6,N6-trimethyllysine1 Publication1
Modified residuei95N6,N6,N6-trimethyllysine1 Publication1

Post-translational modificationi

Binds 1 heme group per subunit.

Keywords - PTMi

Acetylation, Methylation

Proteomic databases

PaxDbiQ0DI31

PTM databases

iPTMnetiQ0DI31

Expressioni

Gene expression databases

ExpressionAtlasiQ0DI31 differential
GenevisibleiQ0DI31 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g34770.1

Structurei

Secondary structure

1112
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 6Combined sources3
Helixi12 – 22Combined sources11
Turni23 – 26Combined sources4
Beta strandi36 – 38Combined sources3
Helixi59 – 64Combined sources6
Helixi70 – 78Combined sources9
Helixi80 – 83Combined sources4
Helixi97 – 110Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1CCRX-ray1.50A2-112[»]
ProteinModelPortaliQ0DI31
SMRiQ0DI31
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ0DI31

Family & Domainsi

Sequence similaritiesi

Belongs to the cytochrome c family.Curated

Phylogenomic databases

eggNOGiKOG3453 Eukaryota
COG3474 LUCA
InParanoidiQ0DI31
KOiK08738
OMAiGLFKTRC
OrthoDBiEOG09360TD6

Family and domain databases

Gene3Di1.10.760.10, 1 hit
InterProiView protein in InterPro
IPR009056 Cyt_c-like_dom
IPR036909 Cyt_c-like_dom_sf
IPR002327 Cyt_c_1A/1B
PANTHERiPTHR11961 PTHR11961, 1 hit
PfamiView protein in Pfam
PF00034 Cytochrom_C, 1 hit
PRINTSiPR00604 CYTCHRMECIAB
SUPFAMiSSF46626 SSF46626, 1 hit
PROSITEiView protein in PROSITE
PS51007 CYTC, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0DI31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASFSEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG
60 70 80 90 100
TTPGYSYSTA NKNMAVIWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
110
ADLISYLKEA TS
Length:112
Mass (Da):12,271
Last modified:October 17, 2006 - v1
Checksum:iC17D2B4628C77146
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12634 mRNA Translation: BAA02159.1
AC124836 Genomic DNA Translation: AAT44244.1
AC137623 Genomic DNA Translation: AAV25652.1
AP008211 Genomic DNA Translation: BAF17492.1
AP014961 Genomic DNA Translation: BAS94074.1
CM000142 Genomic DNA Translation: EAZ34342.1
CM000142 Genomic DNA Translation: EEE63765.1
AK060267 mRNA Translation: BAG87385.1
PIRiJS0709 CCRZ
RefSeqiXP_015640631.1, XM_015785145.1
UniGeneiOs.57469

Genome annotation databases

EnsemblPlantsiOs05t0420600-01; Os05t0420600-01; Os05g0420600
GeneIDi4338825
GrameneiOs05t0420600-01; Os05t0420600-01; Os05g0420600
KEGGiosa:4338825

Similar proteinsi

Entry informationi

Entry nameiCYC_ORYSJ
AccessioniPrimary (citable) accession number: Q0DI31
Secondary accession number(s): B7E4T8, P00055, Q6L4Z1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 17, 2006
Last modified: May 23, 2018
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Protein Spotlight
    Protein Spotlight articles and cited UniProtKB/Swiss-Prot entries
  3. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  4. SIMILARITY comments
    Index of protein domains and families

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