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Protein

Cytochrome c

Gene

CC-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei23Heme (covalent)1
Binding sitei26Heme (covalent)1
Metal bindingi27Iron (heme axial ligand)1
Metal bindingi89Iron (heme axial ligand)1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Respiratory chain, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

ReactomeiR-OSA-111457. Release of apoptotic factors from the mitochondria.
R-OSA-3299685. Detoxification of Reactive Oxygen Species.

Names & Taxonomyi

Protein namesi
Recommended name:
Cytochrome c
Gene namesi
Name:CC-1
Ordered Locus Names:Os05g0420600, LOC_Os05g34770
ORF Names:OsJ_017825, OsJ_18585Imported, OSJNBb0092E21.3, P0426G01.18
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 5

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001083032 – 112Cytochrome cAdd BLAST111

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanine1 Publication1
Modified residuei81N6,N6,N6-trimethyllysine1 Publication1
Modified residuei95N6,N6,N6-trimethyllysine1 Publication1

Post-translational modificationi

Binds 1 heme group per subunit.

Keywords - PTMi

Acetylation, Methylation

Proteomic databases

PaxDbiQ0DI31.
PRIDEiQ0DI31.

Expressioni

Gene expression databases

GenevisibleiQ0DI31. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g34770.1.

Structurei

Secondary structure

1112
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 6Combined sources3
Helixi12 – 22Combined sources11
Turni23 – 26Combined sources4
Beta strandi36 – 38Combined sources3
Helixi59 – 64Combined sources6
Helixi70 – 78Combined sources9
Helixi80 – 83Combined sources4
Helixi97 – 110Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1CCRX-ray1.50A2-112[»]
ProteinModelPortaliQ0DI31.
SMRiQ0DI31.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ0DI31.

Family & Domainsi

Sequence similaritiesi

Belongs to the cytochrome c family.Curated

Phylogenomic databases

eggNOGiKOG3453. Eukaryota.
COG3474. LUCA.
InParanoidiQ0DI31.
KOiK08738.
OMAiNANKNMA.
OrthoDBiEOG09360TD6.

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
InterProiIPR009056. Cyt_c-like_dom.
IPR002327. Cyt_c_1A/1B.
[Graphical view]
PANTHERiPTHR11961. PTHR11961. 1 hit.
PfamiPF00034. Cytochrom_C. 1 hit.
[Graphical view]
PRINTSiPR00604. CYTCHRMECIAB.
SUPFAMiSSF46626. SSF46626. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0DI31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASFSEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG
60 70 80 90 100
TTPGYSYSTA NKNMAVIWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
110
ADLISYLKEA TS
Length:112
Mass (Da):12,271
Last modified:October 17, 2006 - v1
Checksum:iC17D2B4628C77146
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12634 mRNA. Translation: BAA02159.1.
AC124836 Genomic DNA. Translation: AAT44244.1.
AC137623 Genomic DNA. Translation: AAV25652.1.
AP008211 Genomic DNA. Translation: BAF17492.1.
AP014961 Genomic DNA. Translation: BAS94074.1.
CM000142 Genomic DNA. Translation: EAZ34342.1.
CM000142 Genomic DNA. Translation: EEE63765.1.
AK060267 mRNA. Translation: BAG87385.1.
PIRiJS0709. CCRZ.
RefSeqiXP_015640631.1. XM_015785145.1.
UniGeneiOs.57469.

Genome annotation databases

EnsemblPlantsiOS05T0420600-01; OS05T0420600-01; OS05G0420600.
GeneIDi4338825.
GrameneiOS05T0420600-01; OS05T0420600-01; OS05G0420600.
KEGGiosa:4338825.

Cross-referencesi

Web resourcesi

Protein Spotlight

Life shuttle - Issue 76 of November 2006

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12634 mRNA. Translation: BAA02159.1.
AC124836 Genomic DNA. Translation: AAT44244.1.
AC137623 Genomic DNA. Translation: AAV25652.1.
AP008211 Genomic DNA. Translation: BAF17492.1.
AP014961 Genomic DNA. Translation: BAS94074.1.
CM000142 Genomic DNA. Translation: EAZ34342.1.
CM000142 Genomic DNA. Translation: EEE63765.1.
AK060267 mRNA. Translation: BAG87385.1.
PIRiJS0709. CCRZ.
RefSeqiXP_015640631.1. XM_015785145.1.
UniGeneiOs.57469.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1CCRX-ray1.50A2-112[»]
ProteinModelPortaliQ0DI31.
SMRiQ0DI31.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os05g34770.1.

Proteomic databases

PaxDbiQ0DI31.
PRIDEiQ0DI31.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS05T0420600-01; OS05T0420600-01; OS05G0420600.
GeneIDi4338825.
GrameneiOS05T0420600-01; OS05T0420600-01; OS05G0420600.
KEGGiosa:4338825.

Phylogenomic databases

eggNOGiKOG3453. Eukaryota.
COG3474. LUCA.
InParanoidiQ0DI31.
KOiK08738.
OMAiNANKNMA.
OrthoDBiEOG09360TD6.

Enzyme and pathway databases

ReactomeiR-OSA-111457. Release of apoptotic factors from the mitochondria.
R-OSA-3299685. Detoxification of Reactive Oxygen Species.

Miscellaneous databases

EvolutionaryTraceiQ0DI31.

Gene expression databases

GenevisibleiQ0DI31. OS.

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
InterProiIPR009056. Cyt_c-like_dom.
IPR002327. Cyt_c_1A/1B.
[Graphical view]
PANTHERiPTHR11961. PTHR11961. 1 hit.
PfamiPF00034. Cytochrom_C. 1 hit.
[Graphical view]
PRINTSiPR00604. CYTCHRMECIAB.
SUPFAMiSSF46626. SSF46626. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCYC_ORYSJ
AccessioniPrimary (citable) accession number: Q0DI31
Secondary accession number(s): B7E4T8, P00055, Q6L4Z1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 17, 2006
Last modified: November 30, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Protein Spotlight
    Protein Spotlight articles and cited UniProtKB/Swiss-Prot entries
  3. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.