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Q0DHL5

- LAC11_ORYSJ

UniProt

Q0DHL5 - LAC11_ORYSJ

Protein

Putative laccase-11

Gene

LAC11

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Protein uncertaini
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 2 (26 Jun 2007)
      Previous versions | rss
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    Functioni

    Lignin degradation and detoxification of lignin-derived products.By similarity

    Catalytic activityi

    4 benzenediol + O2 = 4 benzosemiquinone + 2 H2O.

    Cofactori

    Binds 4 copper ions per monomer.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi48 – 481Copper 1By similarity
    Metal bindingi50 – 501Copper 2By similarity
    Metal bindingi93 – 931Copper 2By similarity
    Metal bindingi95 – 951Copper 3By similarity
    Metal bindingi440 – 4401Copper 4By similarity
    Metal bindingi443 – 4431Copper 1By similarity
    Metal bindingi445 – 4451Copper 3By similarity
    Metal bindingi502 – 5021Copper 3By similarity
    Metal bindingi503 – 5031Copper 4By similarity
    Metal bindingi504 – 5041Copper 2By similarity
    Metal bindingi508 – 5081Copper 4By similarity

    GO - Molecular functioni

    1. copper ion binding Source: InterPro
    2. hydroquinone:oxygen oxidoreductase activity Source: UniProtKB-EC

    GO - Biological processi

    1. lignin catabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Lignin degradation

    Keywords - Ligandi

    Copper, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative laccase-11 (EC:1.10.3.2)
    Alternative name(s):
    Benzenediol:oxygen oxidoreductase 11
    Diphenol oxidase 11
    Urishiol oxidase 11
    Gene namesi
    Name:LAC11
    Ordered Locus Names:Os05g0458300, LOC_Os05g38390
    ORF Names:OsJ_018044
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 5

    Organism-specific databases

    GrameneiQ0DHL5.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 540540Putative laccase-11PRO_0000291896Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ0DHL5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini1 – 114114Plastocyanin-like 1Add
    BLAST
    Domaini124 – 279156Plastocyanin-like 2Add
    BLAST
    Domaini389 – 523135Plastocyanin-like 3Add
    BLAST

    Sequence similaritiesi

    Belongs to the multicopper oxidase family.Curated
    Contains 3 plastocyanin-like domains.Curated

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG2132.
    HOGENOMiHOG000241916.

    Family and domain databases

    Gene3Di2.60.40.420. 3 hits.
    InterProiIPR001117. Cu-oxidase.
    IPR011706. Cu-oxidase_2.
    IPR011707. Cu-oxidase_3.
    IPR002355. Cu_oxidase_Cu_BS.
    IPR008972. Cupredoxin.
    IPR017761. Laccase.
    [Graphical view]
    PfamiPF00394. Cu-oxidase. 1 hit.
    PF07731. Cu-oxidase_2. 1 hit.
    PF07732. Cu-oxidase_3. 1 hit.
    [Graphical view]
    SUPFAMiSSF49503. SSF49503. 3 hits.
    TIGRFAMsiTIGR03389. laccase. 1 hit.
    PROSITEiPS00079. MULTICOPPER_OXIDASE1. 1 hit.
    PS00080. MULTICOPPER_OXIDASE2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0DHL5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATVTRLCVT KSVPTVNGQF PGPKLVVREG DTLVIRVTNN INNNVTFHWH    50
    GIRQVRSGWA DGPAYITQCP IRSGGSYVYR FTVTGQRGTL WWHAHFSWLR 100
    ATLYGPLVIL PPRGVAYPFP KPHREVPLLL GEWFNADPEA VIKQALQTGG 150
    GPNVSDAYTF NGLPGPTYNC SSSNDTFKLR VRPGKTYLLR LINAALNDEL 200
    FFGVANHTLM VVQADASYVK PFAATALVIS PGQTMDVLLT AAANNPPSRS 250
    FAIAVAPYTN TVGTFDNTTA VAVLEYYGAA TSAAALRSLP LPSLPAYNDT 300
    GAVANFSASF RSLASAQYPA RVPRTVDRHF FFAVGLGADP CQSPVNGTCQ 350
    GPNNTRFAAS MNNVSFVMPR TSLLQAHYQR RYNGVLAANF PAAPRTPFNY 400
    TGTPPNNTFV THGTRVVPLS FNTTVEVVLQ DTSILGAESH PLHLHGYDFY 450
    VVGTGFGNYD ASNDTAKYNL VDPVQRNTIS VPTAGWVAIR FVADNPGVWI 500
    MHCHLDVHLS WGLSMAWLVN DGPLPNQKLP PPPSDIPMCS 540
    Length:540
    Mass (Da):58,622
    Last modified:June 26, 2007 - v2
    Checksum:iC35A55C8FA490CF7
    GO

    Sequence cautioni

    The sequence BAF17658.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008211 Genomic DNA. Translation: BAF17658.1. Sequence problems.
    CM000142 Genomic DNA. Translation: EAZ34561.1.
    RefSeqiNP_001055744.1. NM_001062279.1.
    UniGeneiOs.80267.

    Genome annotation databases

    GeneIDi4339001.
    KEGGiosa:4339001.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008211 Genomic DNA. Translation: BAF17658.1 . Sequence problems.
    CM000142 Genomic DNA. Translation: EAZ34561.1 .
    RefSeqi NP_001055744.1. NM_001062279.1.
    UniGenei Os.80267.

    3D structure databases

    ProteinModelPortali Q0DHL5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4339001.
    KEGGi osa:4339001.

    Organism-specific databases

    Gramenei Q0DHL5.

    Phylogenomic databases

    eggNOGi COG2132.
    HOGENOMi HOG000241916.

    Family and domain databases

    Gene3Di 2.60.40.420. 3 hits.
    InterProi IPR001117. Cu-oxidase.
    IPR011706. Cu-oxidase_2.
    IPR011707. Cu-oxidase_3.
    IPR002355. Cu_oxidase_Cu_BS.
    IPR008972. Cupredoxin.
    IPR017761. Laccase.
    [Graphical view ]
    Pfami PF00394. Cu-oxidase. 1 hit.
    PF07731. Cu-oxidase_2. 1 hit.
    PF07732. Cu-oxidase_3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49503. SSF49503. 3 hits.
    TIGRFAMsi TIGR03389. laccase. 1 hit.
    PROSITEi PS00079. MULTICOPPER_OXIDASE1. 1 hit.
    PS00080. MULTICOPPER_OXIDASE2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiLAC11_ORYSJ
    AccessioniPrimary (citable) accession number: Q0DHL5
    Secondary accession number(s): A3B4S2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 26, 2007
    Last sequence update: June 26, 2007
    Last modified: October 1, 2014
    This is version 58 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Caution

    Lacks the signal peptide, which is one of the conserved features of the laccases.Curated
    Could be the product of a pseudogene.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3