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Protein

Plastocyanin, chloroplastic

Gene

PETE

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.By similarity

Cofactori

Cu2+By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi94 – 941Copper; via pros nitrogenBy similarity
Metal bindingi139 – 1391CopperBy similarity
Metal bindingi142 – 1421Copper; via pros nitrogenBy similarity
Metal bindingi147 – 1471CopperBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Copper, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Plastocyanin, chloroplastic
Gene namesi
Name:PETE
Ordered Locus Names:Os06g0101600, LOC_Os06g01210
ORF Names:OsJ_019001, OSJNBa0075G19.6
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 6, cultivar: Nipponbare

Subcellular locationi

  • Plastidchloroplast thylakoid membrane 1 Publication; Peripheral membrane protein By similarity; Lumenal side By similarity

  • Note: Loosely bound to the inner thylakoid membrane surface in chloroplasts (By similarity).

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 5757Chloroplast1 PublicationAdd
BLAST
Chaini58 – 15497Plastocyanin, chloroplasticPRO_0000002890Add
BLAST

Proteomic databases

PaxDbiQ0DFC9.

Expressioni

Gene expression databases

ExpressionAtlasiQ0DFC9. baseline and differential.
GenevisibleiQ0DFC9. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os06g01210.1.

Structurei

3D structure databases

ProteinModelPortaliQ0DFC9.
SMRiQ0DFC9. Positions 59-154.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini58 – 15497Plastocyanin-likeAdd
BLAST

Sequence similaritiesi

Belongs to the plastocyanin family.Curated
Contains 1 plastocyanin-like domain.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410IY43. Eukaryota.
COG3794. LUCA.
InParanoidiQ0DFC9.
KOiK02638.
OMAiNHEEYAN.

Family and domain databases

Gene3Di2.60.40.420. 1 hit.
InterProiIPR000923. BlueCu_1.
IPR028871. BlueCu_1_BS.
IPR001235. Copper_blue_Plastocyanin.
IPR008972. Cupredoxin.
IPR002387. Plastocyanin.
[Graphical view]
PfamiPF00127. Copper-bind. 1 hit.
[Graphical view]
PRINTSiPR00156. COPPERBLUE.
PR00157. PLASTOCYANIN.
SUPFAMiSSF49503. SSF49503. 1 hit.
TIGRFAMsiTIGR02656. cyanin_plasto. 1 hit.
PROSITEiPS00196. COPPER_BLUE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0DFC9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAALSSAAVT IPSMAPSAPG RRRMRSSLVV RASLGKAAGA AAVAVAASAM
60 70 80 90 100
LAGGAMAQEV LLGANGGVLV FEPNDFTVKS GETITFKNNA GFPHNVVFDE
110 120 130 140 150
DAVPSGVDVS KISQEEYLNA PGETFSVTLT VPGTYGFYCE PHAGAGMVGK

VTVN
Length:154
Mass (Da):15,577
Last modified:October 17, 2006 - v1
Checksum:iE45725D25B5F400D
GO

Sequence cautioni

The sequence EAZ35518.1 differs from that shown. Reason: Frameshift at position 147. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF093636 mRNA. Translation: AAC78108.1.
AP002842 Genomic DNA. Translation: BAD67938.1.
AP008212 Genomic DNA. Translation: BAF18444.1.
AP014962 Genomic DNA. Translation: BAS95699.1.
CM000143 Genomic DNA. Translation: EAZ35518.1. Frameshift.
AK070447 mRNA. Translation: BAG91958.1.
UniGeneiOs.7915.

Genome annotation databases

EnsemblPlantsiOS06T0101600-01; OS06T0101600-01; OS06G0101600.
GrameneiOS06T0101600-01; OS06T0101600-01; OS06G0101600.
KEGGiosa:4339833.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF093636 mRNA. Translation: AAC78108.1.
AP002842 Genomic DNA. Translation: BAD67938.1.
AP008212 Genomic DNA. Translation: BAF18444.1.
AP014962 Genomic DNA. Translation: BAS95699.1.
CM000143 Genomic DNA. Translation: EAZ35518.1. Frameshift.
AK070447 mRNA. Translation: BAG91958.1.
UniGeneiOs.7915.

3D structure databases

ProteinModelPortaliQ0DFC9.
SMRiQ0DFC9. Positions 59-154.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os06g01210.1.

Proteomic databases

PaxDbiQ0DFC9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS06T0101600-01; OS06T0101600-01; OS06G0101600.
GrameneiOS06T0101600-01; OS06T0101600-01; OS06G0101600.
KEGGiosa:4339833.

Phylogenomic databases

eggNOGiENOG410IY43. Eukaryota.
COG3794. LUCA.
InParanoidiQ0DFC9.
KOiK02638.
OMAiNHEEYAN.

Gene expression databases

ExpressionAtlasiQ0DFC9. baseline and differential.
GenevisibleiQ0DFC9. OS.

Family and domain databases

Gene3Di2.60.40.420. 1 hit.
InterProiIPR000923. BlueCu_1.
IPR028871. BlueCu_1_BS.
IPR001235. Copper_blue_Plastocyanin.
IPR008972. Cupredoxin.
IPR002387. Plastocyanin.
[Graphical view]
PfamiPF00127. Copper-bind. 1 hit.
[Graphical view]
PRINTSiPR00156. COPPERBLUE.
PR00157. PLASTOCYANIN.
SUPFAMiSSF49503. SSF49503. 1 hit.
TIGRFAMsiTIGR02656. cyanin_plasto. 1 hit.
PROSITEiPS00196. COPPER_BLUE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning and characterization of plastocyanin precursor in rice."
    Lee J.-S.
    Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Ilpoom.
    Tissue: Leaf.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  6. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  7. "The amino acid sequence of plastocyanin from rice (Oryza sativa, subspecies japonica)."
    Yano H., Kamo M., Tsugita A., Aso K., Nozu Y.
    Protein Seq. Data Anal. 2:385-389(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 58-154, SUBCELLULAR LOCATION.

Entry informationi

Entry nameiPLAS_ORYSJ
AccessioniPrimary (citable) accession number: Q0DFC9
Secondary accession number(s): A3B7H9
, B7EHW1, O24185, P20423, Q5VRI8, Q9SBB8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 17, 2006
Last modified: May 11, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.