true2007-07-242024-03-27103SSY1_ORYSJIdentification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds.Baba T.Nishihara M.Mizuno K.Kawasaki T.Shimada H.Kobayashi E.Ohnishi S.Tanaka K.Arai Y.doi:10.1104/pp.103.2.5651993Plant Physiol.103565-573NUCLEOTIDE SEQUENCE [MRNA]PROTEIN SEQUENCE OF 114-131TISSUE SPECIFICITYSeedStructure, organization and chromosomal location of the gene encoding a form of rice soluble starch synthase.Tanaka K.Ohnishi S.Kishimoto N.Kawasaki T.Baba T.doi:10.1104/pp.108.2.6771995Plant Physiol.108677-683NUCLEOTIDE SEQUENCE [GENOMIC DNA]Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities.Tian Z.Qian Q.Liu Q.Yan M.Liu X.Yan C.Liu G.Gao Z.Tang S.Zeng D.Wang Y.Yu J.Gu M.Li J.doi:10.1073/pnas.09123961062009Proc. Natl. Acad. Sci. U.S.A.10621760-21765NUCLEOTIDE SEQUENCE [GENOMIC DNA]Junwang X.Zhen Z.1999-07EMBL/GenBank/DDBJNUCLEOTIDE SEQUENCE [MRNA]cv. Nanjing 37The map-based sequence of the rice genome.International rice genome sequencing project (IRGSP)doi:10.1038/nature038952005Nature436793-800NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]cv. NipponbareThe rice annotation project database (RAP-DB): 2008 update.The rice annotation project (RAP)doi:10.1093/nar/gkm9782008Nucleic Acids Res.36D1028-D1033GENOME REANNOTATIONImprovement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.Kawahara Y.de la Bastide M.Hamilton J.P.Kanamori H.McCombie W.R.Ouyang S.Schwartz D.C.Tanaka T.Wu J.Zhou S.Childs K.L.Davidson R.M.Lin H.Quesada-Ocampo L.Vaillancourt B.Sakai H.Lee S.S.Kim J.Numa H.Itoh T.Buell C.R.Matsumoto T.doi:10.1186/1939-8433-6-42013Rice64GENOME REANNOTATIONCollection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.The rice full-length cDNA consortiumdoi:10.1126/science.10812882003Science301376-379NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]Function and characterization of starch synthase I using mutants in rice.Fujita N.Yoshida M.Asakura N.Ohdan T.Miyao A.Hirochika H.Nakamura Y.doi:10.1104/pp.105.0718452006Plant Physiol.1401070-1084FUNCTIONDISRUPTION PHENOTYPEStructures of starches from rice mutants deficient in the starch synthase isozyme SSI or SSIIIa.Hanashiro I.Higuchi T.Aihara S.Nakamura Y.Fujita N.doi:10.1021/bm200019q2011Biomacromolecules121621-1628FUNCTIONDISRUPTION PHENOTYPEStarch biosynthesis in rice endosperm requires the presence of either starch synthase I or IIIa.Fujita N.Satoh R.Hayashi A.Kodama M.Itoh R.Aihara S.Nakamura Y.doi:10.1093/jxb/err1252011J. Exp. Bot.624819-4831FUNCTIONFrameshift.Frameshift.Frameshift.Glycosyltransferase Family 5EukaryotaStarch biosynthesisGT5_Glycogen_synthase_DULL1-likeGlycogen Phosphorylase BGlycogen_synthGlyco_trans_1GS/SSStarch_synth_cat_domglgAGRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTICSTARCH SYNTHASE 1, CHLOROPLASTIC_AMYLOPLASTICGlyco_transf_5Glycos_transf_1UDP-Glycosyltransferase/glycogen phosphorylaseOSSoluble starch synthase 1, chloroplastic/amyloplastic2.4.1.21Starch synthase ISS1SSS1Os06g0160700LOC_Os06g06560P0681F10.13Involved in starch synthesis in endosperm amyloplasts (PubMed:16443699, PubMed:21417378, PubMed:21730357). Plays a role in the elongation of amylopectin chains (PubMed:16443699, PubMed:21417378, PubMed:21730357). Synthesizes preferentially amylopectin chains with a degree of polymerization (DP) of 7 to 11 by elongating chains with a DP of 4 to 7 (PubMed:16443699). Generates distincly chains with a DP of 8 to 12 chains from short chains with a DP of 6 to 7 (PubMed:16443699).Amyloplast or chloroplast, soluble.Leaves and immature seeds.Decrease in average length of amylopectin chains (PubMed:21417378). Reduced content of amylopectin chains with a degree of polymerization (DP) of 8 to 12, but increased content of chains with a DP of 6 to 7 and a DP of 16 to 19 (PubMed:16443699).Three forms of soluble starch synthase were purified: RSS1, RSS2 and RSS3.Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.Chloroplast1113Soluble starch synthase 1, chloroplastic/amyloplastic59234114641Disordered6296Pro residues6490147HG46472006-10-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