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Q0DCM5

- MAN6_ORYSJ

UniProt

Q0DCM5 - MAN6_ORYSJ

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Protein

Mannan endo-1,4-beta-mannosidase 6

Gene

MAN6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Random hydrolysis of (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei224 – 2241Proton donorBy similarity
Active sitei344 – 3441NucleophileBy similarity

GO - Molecular functioni

  1. mannan endo-1,4-beta-mannosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Protein family/group databases

CAZyiGH5. Glycoside Hydrolase Family 5.

Names & Taxonomyi

Protein namesi
Recommended name:
Mannan endo-1,4-beta-mannosidase 6 (EC:3.2.1.78)
Alternative name(s):
Beta-mannanase 6
Endo-beta-1,4-mannanase 6
OsMAN6
Gene namesi
Name:MAN6
Ordered Locus Names:Os06g0311600, LOC_Os06g20620
ORF Names:OSJNBb0005N06.19
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 6

Organism-specific databases

GrameneiQ0DCM5.

Subcellular locationi

Secreted Curated

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence AnalysisAdd
BLAST
Chaini23 – 440418Mannan endo-1,4-beta-mannosidase 6PRO_0000277487Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi173 – 1731N-linked (GlcNAc...)Sequence Analysis
Glycosylationi176 – 1761N-linked (GlcNAc...)Sequence Analysis
Glycosylationi230 – 2301N-linked (GlcNAc...)Sequence Analysis
Glycosylationi330 – 3301N-linked (GlcNAc...)Sequence Analysis
Glycosylationi356 – 3561N-linked (GlcNAc...)Sequence Analysis
Glycosylationi401 – 4011N-linked (GlcNAc...)Sequence Analysis
Glycosylationi418 – 4181N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Expressioni

Tissue specificityi

Expressed in stems and leaves, and at lower levels in roots and seeds.1 Publication

Gene expression databases

ExpressionAtlasiQ0DCM5. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ0DCM5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG3934.
InParanoidiQ0DCM5.
OMAiLCSDFIQ.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001547. Glyco_hydro_5.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00150. Cellulase. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0DCM5 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRQERRLYSL LGLLLLLAVV YLTWFPTTHD GGGGGGGGWV KLPVPWLQPR
60 70 80 90 100
MPFAARRGTH FVDADTGSPL YVNGWNSYWL LPARSPALAA EMLRRGRRMG
110 120 130 140 150
LSVCRTWAFS DGGPGALQIS PGRFSEAVFQ VLDYVIYEAR RNHIRLILCL
160 170 180 190 200
VNNLDNLGGK AQYVQWAQAA GANMTNSTDS FYSHPTIKRY YKDYVKAILT
210 220 230 240 250
RRNSYSRIRY SDEPAIFAWE LMNEPRCVSN SSGPYLQAWI AEMAAYVKSL
260 270 280 290 300
DTNHLVTVGT EGFYGPGIAE RLGVNPGEWA ASLCSDFIQN SAVEHIDFAS
310 320 330 340 350
VHAYPDSWLP RASLEEKVRY LSNWVDSHLN DSEQILKKPV LFTEVGYLQH
360 370 380 390 400
SDANSNSTVD RDIILRIVYD KIYDSARKLQ AGSGALIWQL MVEGTHMYGD
410 420 430 440
NFSVVARDRP STYSLITNQS CRLQRLYGEG DPGWQCSIPP
Length:440
Mass (Da):49,455
Last modified:February 6, 2007 - v2
Checksum:i244DD2B94365FAB3
GO

Sequence cautioni

The sequence BAF19398.2 differs from that shown. Reason: Erroneous gene model prediction.

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti354 – 3541N → S in AK242683. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP004583 Genomic DNA. Translation: BAD61770.1.
AP008212 Genomic DNA. Translation: BAF19398.2. Sequence problems.
AK242683 mRNA. No translation available.
RefSeqiNP_001057484.2. NM_001064019.2.
UniGeneiOs.61630.

Genome annotation databases

EnsemblPlantsiOS06T0311600-01; OS06T0311600-01; OS06G0311600.
GeneIDi4340863.
KEGGiosa:4340863.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP004583 Genomic DNA. Translation: BAD61770.1 .
AP008212 Genomic DNA. Translation: BAF19398.2 . Sequence problems.
AK242683 mRNA. No translation available.
RefSeqi NP_001057484.2. NM_001064019.2.
UniGenei Os.61630.

3D structure databases

ProteinModelPortali Q0DCM5.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH5. Glycoside Hydrolase Family 5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS06T0311600-01 ; OS06T0311600-01 ; OS06G0311600 .
GeneIDi 4340863.
KEGGi osa:4340863.

Organism-specific databases

Gramenei Q0DCM5.

Phylogenomic databases

eggNOGi COG3934.
InParanoidi Q0DCM5.
OMAi LCSDFIQ.

Gene expression databases

ExpressionAtlasi Q0DCM5. baseline.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR001547. Glyco_hydro_5.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
Pfami PF00150. Cellulase. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar."
    Yuan J.S., Yang X., Lai J., Lin H., Cheng Z.-M., Nonogaki H., Chen F.
    Funct. Integr. Genomics 7:1-16(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY.
  4. "Oryza sativa full length cDNA."
    Kikuchi S.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiMAN6_ORYSJ
AccessioniPrimary (citable) accession number: Q0DCM5
Secondary accession number(s): Q5Z7X8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: February 6, 2007
Last modified: October 29, 2014
This is version 60 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3