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Q0DCM5

- MAN6_ORYSJ

UniProt

Q0DCM5 - MAN6_ORYSJ

Protein

Mannan endo-1,4-beta-mannosidase 6

Gene

MAN6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 2 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Random hydrolysis of (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei224 – 2241Proton donorBy similarity
    Active sitei344 – 3441NucleophileBy similarity

    GO - Molecular functioni

    1. mannan endo-1,4-beta-mannosidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Protein family/group databases

    CAZyiGH5. Glycoside Hydrolase Family 5.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Mannan endo-1,4-beta-mannosidase 6 (EC:3.2.1.78)
    Alternative name(s):
    Beta-mannanase 6
    Endo-beta-1,4-mannanase 6
    OsMAN6
    Gene namesi
    Name:MAN6
    Ordered Locus Names:Os06g0311600, LOC_Os06g20620
    ORF Names:OSJNBb0005N06.19
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 6

    Organism-specific databases

    GrameneiQ0DCM5.

    Subcellular locationi

    Secreted Curated

    GO - Cellular componenti

    1. extracellular region Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2222Sequence AnalysisAdd
    BLAST
    Chaini23 – 440418Mannan endo-1,4-beta-mannosidase 6PRO_0000277487Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi173 – 1731N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi176 – 1761N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi230 – 2301N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi330 – 3301N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi356 – 3561N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi401 – 4011N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi418 – 4181N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Expressioni

    Tissue specificityi

    Expressed in stems and leaves, and at lower levels in roots and seeds.1 Publication

    Structurei

    3D structure databases

    ProteinModelPortaliQ0DCM5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG3934.
    OMAiLCSDFIQ.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR001547. Glyco_hydro_5.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PfamiPF00150. Cellulase. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q0DCM5-1 [UniParc]FASTAAdd to Basket

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    MRQERRLYSL LGLLLLLAVV YLTWFPTTHD GGGGGGGGWV KLPVPWLQPR    50
    MPFAARRGTH FVDADTGSPL YVNGWNSYWL LPARSPALAA EMLRRGRRMG 100
    LSVCRTWAFS DGGPGALQIS PGRFSEAVFQ VLDYVIYEAR RNHIRLILCL 150
    VNNLDNLGGK AQYVQWAQAA GANMTNSTDS FYSHPTIKRY YKDYVKAILT 200
    RRNSYSRIRY SDEPAIFAWE LMNEPRCVSN SSGPYLQAWI AEMAAYVKSL 250
    DTNHLVTVGT EGFYGPGIAE RLGVNPGEWA ASLCSDFIQN SAVEHIDFAS 300
    VHAYPDSWLP RASLEEKVRY LSNWVDSHLN DSEQILKKPV LFTEVGYLQH 350
    SDANSNSTVD RDIILRIVYD KIYDSARKLQ AGSGALIWQL MVEGTHMYGD 400
    NFSVVARDRP STYSLITNQS CRLQRLYGEG DPGWQCSIPP 440
    Length:440
    Mass (Da):49,455
    Last modified:February 6, 2007 - v2
    Checksum:i244DD2B94365FAB3
    GO

    Sequence cautioni

    The sequence BAF19398.2 differs from that shown. Reason: Erroneous gene model prediction.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti354 – 3541N → S in AK242683. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP004583 Genomic DNA. Translation: BAD61770.1.
    AP008212 Genomic DNA. Translation: BAF19398.2. Sequence problems.
    AK242683 mRNA. No translation available.
    RefSeqiNP_001057484.2. NM_001064019.2.
    UniGeneiOs.61630.

    Genome annotation databases

    EnsemblPlantsiOS06T0311600-01; OS06T0311600-01; OS06G0311600.
    GeneIDi4340863.
    KEGGiosa:4340863.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP004583 Genomic DNA. Translation: BAD61770.1 .
    AP008212 Genomic DNA. Translation: BAF19398.2 . Sequence problems.
    AK242683 mRNA. No translation available.
    RefSeqi NP_001057484.2. NM_001064019.2.
    UniGenei Os.61630.

    3D structure databases

    ProteinModelPortali Q0DCM5.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH5. Glycoside Hydrolase Family 5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS06T0311600-01 ; OS06T0311600-01 ; OS06G0311600 .
    GeneIDi 4340863.
    KEGGi osa:4340863.

    Organism-specific databases

    Gramenei Q0DCM5.

    Phylogenomic databases

    eggNOGi COG3934.
    OMAi LCSDFIQ.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR001547. Glyco_hydro_5.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    Pfami PF00150. Cellulase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar."
      Yuan J.S., Yang X., Lai J., Lin H., Cheng Z.-M., Nonogaki H., Chen F.
      Funct. Integr. Genomics 7:1-16(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, TISSUE SPECIFICITY.
    4. "Oryza sativa full length cDNA."
      Kikuchi S.
      Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiMAN6_ORYSJ
    AccessioniPrimary (citable) accession number: Q0DCM5
    Secondary accession number(s): Q5Z7X8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 59 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3