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Q0DBU3

- P2C56_ORYSJ

UniProt

Q0DBU3 - P2C56_ORYSJ

Protein

Probable protein phosphatase 2C 56

Gene

Os06g0526800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 2 (10 Feb 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi132 – 1321Manganese 1By similarity
    Metal bindingi132 – 1321Manganese 2By similarity
    Metal bindingi133 – 1331Manganese 1; via carbonyl oxygenBy similarity
    Metal bindingi295 – 2951Manganese 2By similarity
    Metal bindingi334 – 3341Manganese 2By similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. protein serine/threonine phosphatase activity Source: InterPro

    GO - Biological processi

    1. protein dephosphorylation Source: InterPro

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Magnesium, Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein phosphatase 2C 56 (EC:3.1.3.16)
    Short name:
    OsPP2C56
    Gene namesi
    Ordered Locus Names:Os06g0526800, Os06g0526950, LOC_Os06g33549
    ORF Names:OsJ_020684, OSJNBa0043B22.28, P0001B01.8
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 6

    Organism-specific databases

    GrameneiQ0DBU3.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 352352Probable protein phosphatase 2C 56PRO_0000363303Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ0DBU3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini95 – 336242PP2C-likeAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi51 – 566Poly-Ser

    Sequence similaritiesi

    Belongs to the PP2C family.Curated
    Contains 1 PP2C-like domain.Curated

    Phylogenomic databases

    eggNOGiCOG0631.
    HOGENOMiHOG000233896.
    OMAiMEDRYDV.

    Family and domain databases

    Gene3Di3.60.40.10. 1 hit.
    InterProiIPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view]
    PANTHERiPTHR13832. PTHR13832. 1 hit.
    PfamiPF00481. PP2C. 1 hit.
    [Graphical view]
    SMARTiSM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view]
    SUPFAMiSSF81606. SSF81606. 1 hit.
    PROSITEiPS01032. PP2C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0DBU3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARAAGLRAL VGIEAAGRGR RVAASPSPGG TPAASRGLPG WPGFCGVGCG    50
    SSSSSSFAPP RMQARRAAGS AARTRSPSQS NGWITGGSAS EDGRLSWDYS 100
    SFKGRRPSME DRFSIKMTTI NEQTVSLFGV FDGHGGSLAA EYLKEHLFEN 150
    LVNHPELLRD TKLAISQTFL KTDADFLESV SSNPFRDDGS TAVTAILVGN 200
    HLYVGNVGDS RVVALKAGKA VPLSEDHKPN RKDEQKRIED AGGIVVFDDT 250
    WRVNGLLAMS RAFGNRALKH YVKAEPDIQE KVVDESLEYL ILATDGLWDV 300
    MRNEDAVSLL KAQDGPKAAA MKLTEVAHSR LTLDNITCIV LQFHHGKSTN 350
    SN 352
    Length:352
    Mass (Da):37,812
    Last modified:February 10, 2009 - v2
    Checksum:i788CB04D163C7F43
    GO

    Sequence cautioni

    The sequence BAD46121.1 differs from that shown. Reason: Erroneous gene model prediction.
    The sequence BAD54192.1 differs from that shown. Reason: Erroneous gene model prediction.
    The sequence BAF19680.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP005470 Genomic DNA. Translation: BAD46121.1. Sequence problems.
    AP004745 Genomic DNA. Translation: BAD54192.1. Sequence problems.
    AP008212 Genomic DNA. Translation: BAF19680.1. Sequence problems.
    CM000143 Genomic DNA. No translation available.
    RefSeqiNP_001057766.1. NM_001064301.1.
    NP_001174830.1. NM_001187901.1.
    UniGeneiOs.27037.

    Genome annotation databases

    EnsemblPlantsiOS06T0526800-00; OS06T0526800-00; OS06G0526800.
    GeneIDi4341188.
    9270577.
    KEGGiosa:4341188.
    osa:9270577.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP005470 Genomic DNA. Translation: BAD46121.1 . Sequence problems.
    AP004745 Genomic DNA. Translation: BAD54192.1 . Sequence problems.
    AP008212 Genomic DNA. Translation: BAF19680.1 . Sequence problems.
    CM000143 Genomic DNA. No translation available.
    RefSeqi NP_001057766.1. NM_001064301.1.
    NP_001174830.1. NM_001187901.1.
    UniGenei Os.27037.

    3D structure databases

    ProteinModelPortali Q0DBU3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS06T0526800-00 ; OS06T0526800-00 ; OS06G0526800 .
    GeneIDi 4341188.
    9270577.
    KEGGi osa:4341188.
    osa:9270577.

    Organism-specific databases

    Gramenei Q0DBU3.

    Phylogenomic databases

    eggNOGi COG0631.
    HOGENOMi HOG000233896.
    OMAi MEDRYDV.

    Family and domain databases

    Gene3Di 3.60.40.10. 1 hit.
    InterProi IPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view ]
    PANTHERi PTHR13832. PTHR13832. 1 hit.
    Pfami PF00481. PP2C. 1 hit.
    [Graphical view ]
    SMARTi SM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81606. SSF81606. 1 hit.
    PROSITEi PS01032. PP2C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
      Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
      BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiP2C56_ORYSJ
    AccessioniPrimary (citable) accession number: Q0DBU3
    Secondary accession number(s): Q652Z6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 10, 2009
    Last sequence update: February 10, 2009
    Last modified: October 1, 2014
    This is version 60 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3