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Protein

Probable protein phosphatase 2C 56

Gene

Os06g0526800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi132 – 1321Manganese 1By similarity
Metal bindingi132 – 1321Manganese 2By similarity
Metal bindingi133 – 1331Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi295 – 2951Manganese 2By similarity
Metal bindingi334 – 3341Manganese 2By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. protein serine/threonine phosphatase activity Source: InterPro

GO - Biological processi

  1. protein dephosphorylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 56 (EC:3.1.3.16)
Short name:
OsPP2C56
Gene namesi
Ordered Locus Names:Os06g0526800, Os06g0526950, LOC_Os06g33549
ORF Names:OsJ_020684, OSJNBa0043B22.28, P0001B01.8
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763 Componenti: Chromosome 6

Organism-specific databases

GrameneiQ0DBU3.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 352352Probable protein phosphatase 2C 56PRO_0000363303Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ0DBU3. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ0DBU3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini96 – 343248PPM-type phosphatasePROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi51 – 566Poly-Ser

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PPM-type phosphatase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000233896.
InParanoidiQ0DBU3.
OMAiKMTTINE.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PPM_1. 1 hit.
PS51746. PPM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0DBU3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARAAGLRAL VGIEAAGRGR RVAASPSPGG TPAASRGLPG WPGFCGVGCG
60 70 80 90 100
SSSSSSFAPP RMQARRAAGS AARTRSPSQS NGWITGGSAS EDGRLSWDYS
110 120 130 140 150
SFKGRRPSME DRFSIKMTTI NEQTVSLFGV FDGHGGSLAA EYLKEHLFEN
160 170 180 190 200
LVNHPELLRD TKLAISQTFL KTDADFLESV SSNPFRDDGS TAVTAILVGN
210 220 230 240 250
HLYVGNVGDS RVVALKAGKA VPLSEDHKPN RKDEQKRIED AGGIVVFDDT
260 270 280 290 300
WRVNGLLAMS RAFGNRALKH YVKAEPDIQE KVVDESLEYL ILATDGLWDV
310 320 330 340 350
MRNEDAVSLL KAQDGPKAAA MKLTEVAHSR LTLDNITCIV LQFHHGKSTN

SN
Length:352
Mass (Da):37,812
Last modified:February 10, 2009 - v2
Checksum:i788CB04D163C7F43
GO

Sequence cautioni

The sequence BAD46121.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAD54192.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAF19680.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005470 Genomic DNA. Translation: BAD46121.1. Sequence problems.
AP004745 Genomic DNA. Translation: BAD54192.1. Sequence problems.
AP008212 Genomic DNA. Translation: BAF19680.1. Sequence problems.
CM000143 Genomic DNA. No translation available.
RefSeqiNP_001057766.1. NM_001064301.1.
NP_001174830.1. NM_001187901.1.
UniGeneiOs.27037.

Genome annotation databases

EnsemblPlantsiOS06T0526800-00; OS06T0526800-00; OS06G0526800.
GeneIDi4341188.
9270577.
KEGGiosa:4341188.
osa:9270577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005470 Genomic DNA. Translation: BAD46121.1. Sequence problems.
AP004745 Genomic DNA. Translation: BAD54192.1. Sequence problems.
AP008212 Genomic DNA. Translation: BAF19680.1. Sequence problems.
CM000143 Genomic DNA. No translation available.
RefSeqiNP_001057766.1. NM_001064301.1.
NP_001174830.1. NM_001187901.1.
UniGeneiOs.27037.

3D structure databases

ProteinModelPortaliQ0DBU3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS06T0526800-00; OS06T0526800-00; OS06G0526800.
GeneIDi4341188.
9270577.
KEGGiosa:4341188.
osa:9270577.

Organism-specific databases

GrameneiQ0DBU3.

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000233896.
InParanoidiQ0DBU3.
OMAiKMTTINE.

Gene expression databases

ExpressionAtlasiQ0DBU3. baseline.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PPM_1. 1 hit.
PS51746. PPM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C56_ORYSJ
AccessioniPrimary (citable) accession number: Q0DBU3
Secondary accession number(s): Q652Z6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 1, 2015
This is version 64 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.