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Protein

Heat stress transcription factor C-2b

Gene

HSFC2B

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processStress response, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Heat stress transcription factor C-2b
Alternative name(s):
Heat stress transcription factor 16
Short name:
OsHsf-16
Gene namesi
Name:HSFC2B
Synonyms:HSF16
Ordered Locus Names:Os06g0553100, LOC_Os06g35960
ORF Names:P0427B07.22
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003508441 – 278Heat stress transcription factor C-2bAdd BLAST278

Post-translational modificationi

Exhibits temperature-dependent phosphorylation.By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ0DBL6.

Interactioni

Subunit structurei

Homotrimer.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os06g35960.1.

Structurei

3D structure databases

SMRiQ0DBL6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni143 – 179Hydrophobic repeat HR-A/BAdd BLAST37

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi219 – 222Nuclear localization signalSequence analysis4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi107 – 115Poly-Gly9
Compositional biasi124 – 129Poly-Gly6
Compositional biasi190 – 197Poly-Gly8

Domaini

The hydrophobic-rich region (HR-A/B) corresponds to the oligomerization domain.

Sequence similaritiesi

Belongs to the HSF family. Class C subfamily.Curated

Phylogenomic databases

eggNOGiKOG0627. Eukaryota.
COG5169. LUCA.
InParanoidiQ0DBL6.
KOiK09419.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000232. HSF_DNA-bd.
IPR027725. HSF_fam.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR10015. PTHR10015. 1 hit.
PfamiView protein in Pfam
PF00447. HSF_DNA-bind. 1 hit.
PRINTSiPR00056. HSFDOMAIN.
SMARTiView protein in SMART
SM00415. HSF. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS00434. HSF_DOMAIN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0DBL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAAGGGAA PFVWKTYRMV EDPGTDGVIG WGKGNNSFVV ADPFVFSQTL
60 70 80 90 100
LPAHFKHNNF SSFVRQLNTY GFRKVDPDRW EFAHASFLRG QTHLLRNIVR
110 120 130 140 150
RGSAAAGGGG GGGGGKRRDA SADGGGGGGD EDMTMVATEV VRLKQEQRTI
160 170 180 190 200
DDRVAAMWRR VQETERRPKQ MLAFLLKVVG DRDKLHRLVG GGGNGNGAAT
210 220 230 240 250
AAAADNGFAD AARAGCGEKR ARLLLDGDNT GAFGPDAVDF AGFYTGADMF
260 270
PDVAVDAAAA AAGGSAGCSF AFGVDSGY
Length:278
Mass (Da):28,971
Last modified:October 17, 2006 - v1
Checksum:iAE0B152C854A7B37
GO

Sequence cautioni

The sequence BAD53671 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAF19757 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003682 Genomic DNA. Translation: BAD53671.1. Sequence problems.
AP008212 Genomic DNA. Translation: BAF19757.2. Sequence problems.
AP014962 Genomic DNA. No translation available.
RefSeqiXP_015641665.1. XM_015786179.1.
UniGeneiOs.74142.

Genome annotation databases

GeneIDi4341273.
KEGGiosa:4341273.

Similar proteinsi

Entry informationi

Entry nameiHFC2B_ORYSJ
AccessioniPrimary (citable) accession number: Q0DBL6
Secondary accession number(s): Q5Z9D6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 23, 2008
Last sequence update: October 17, 2006
Last modified: August 30, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families