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Protein
Submitted name:

Os06g0598500 protein

Gene

Os06g0598500

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Os06g0598500 proteinImported
Gene namesi
Ordered Locus Names:Os06g0598500Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 6

Organism-specific databases

GrameneiQ0DB64.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os06g39754.1.

Structurei

3D structure databases

ProteinModelPortaliQ0DB64.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

InParanoidiQ0DB64.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0DB64-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPQTETKAS VGFKAGVKDY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP
60 70 80 90 100
EEAGAAVAAE SSTGTCEEMI KRAVFARELG VPIVMHDYLT GGFTANTSLA
110 120 130 140 150
HYCRDNGLLL HIHRAMHAVI DRQKNHGMHF RVLAKALRMS GGDHIHAGTV
160 170 180 190 200
VGKLEGERDM TLGFVDLLRD DFIEKDRARG IFFTQDWVSM PGVIPVASGG
210 220 230 240 250
IHVWHMPALT EIFGDDSVLQ FGGGTLGHPW GNAPGAAANR VALEACVQAR
260 270
NKGAILLVKV MKLSDQLANG VLN
Length:273
Mass (Da):29,536
Last modified:October 13, 2009 - v2
Checksum:i665EDFA1623D4BD0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008212 Genomic DNA. Translation: BAF19909.2.
RefSeqiNP_001057995.2. NM_001064530.2.
UniGeneiOs.99216.

Genome annotation databases

GeneIDi4341443.
KEGGiosa:4341443.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008212 Genomic DNA. Translation: BAF19909.2.
RefSeqiNP_001057995.2. NM_001064530.2.
UniGeneiOs.99216.

3D structure databases

ProteinModelPortaliQ0DB64.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os06g39754.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4341443.
KEGGiosa:4341443.

Organism-specific databases

GrameneiQ0DB64.

Phylogenomic databases

InParanoidiQ0DB64.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. NipponbareImported.

Entry informationi

Entry nameiQ0DB64_ORYSJ
AccessioniPrimary (citable) accession number: Q0DB64
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 13, 2009
Last modified: June 24, 2015
This is version 58 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.