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Q0DA21

- BGL25_ORYSJ

UniProt

Q0DA21 - BGL25_ORYSJ

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Protein
Beta-glucosidase 25
Gene
BGLU25, Os06g0683300, LOC_Os06g46940
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei39 – 391Substrate By similarity
Binding sitei140 – 1401Substrate By similarity
Binding sitei185 – 1851Substrate By similarity
Active sitei186 – 1861Proton donor By similarity
Binding sitei329 – 3291Substrate By similarity
Active sitei402 – 4021Nucleophile By similarity
Binding sitei452 – 4521Substrate By similarity

GO - Molecular functioni

  1. beta-glucosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Protein family/group databases

CAZyiGH1. Glycoside Hydrolase Family 1.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-glucosidase 25 (EC:3.2.1.21)
Short name:
Os6bglu25
Gene namesi
Name:BGLU25
Ordered Locus Names:Os06g0683300, LOC_Os06g46940
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 6

Organism-specific databases

GrameneiQ0DA21.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 Reviewed prediction
Add
BLAST
Chaini20 – 501482Beta-glucosidase 25
PRO_0000390342Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi107 – 1071N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi205 ↔ 213 By similarity
Glycosylationi478 – 4781N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiQ0DA21.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os06g46940.2.

Structurei

3D structure databases

ProteinModelPortaliQ0DA21.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni459 – 4602Substrate binding By similarity

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088630.
KOiK01188.
OMAiSSWLHIV.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q0DA21-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MSLLTLVHIL VSFSACVEAI SRADFPPGFI FGTASSAYQY EGAVNEGQRG    50
PTIWDTLTKR PGRVIDFSNA DVAVDHYHRY KEDVELMNDI GMDAYRFSIS 100
WSRIFPNGTG EPNEEGLSYY NSLIDALLDK GIEPYVTLFH WDLPQALEDR 150
YGGWLNSEII EDFVQYAFTC FKEFGDRVKH WITFNEPYNF AIDGYDLGIQ 200
APGRCSILSH VFCREGKSST EPYIVAHNIL LAHAGAFRAY EQHFKNEQGG 250
LIGIALNSRW YEPFSNADED TEAAARAMDF ELGWFLDPLM FGHYPPSMQK 300
LAGDRLPQFS THASKLVSGS LDFVGINHYT TLYARNDRLR IRKLVMDDAS 350
TDSAVIPTAY RHGKKIGETA ASSWLHIVPW GMFKLMKHVK EKYGNPPVVI 400
TENGMDDANH PFSRLEDVLQ DDKRIQYHND YMSNLLDAIR KEGCNVHGYF 450
VWSLLDNWEW NSGYTVRFGL YYIDYKNNLT RIPKASVQWF SQVLAQKTAI 500
I 501
Length:501
Mass (Da):57,191
Last modified:December 15, 2009 - v2
Checksum:i09FEA57303269054
GO
Isoform 2 (identifier: Q0DA21-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-86: Missing.
     303-312: GDRLPQFSTH → ETIDCGSGNL
     313-501: Missing.

Note: No experimental confirmation available.

Show »
Length:226
Mass (Da):25,712
Checksum:i8CA8C0A5987DD9E7
GO

Sequence cautioni

The sequence BAF20302.1 differs from that shown. Reason: Erroneous gene model prediction.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 8686Missing in isoform 2.
VSP_038508Add
BLAST
Alternative sequencei303 – 31210GDRLPQFSTH → ETIDCGSGNL in isoform 2.
VSP_038509
Alternative sequencei313 – 501189Missing in isoform 2.
VSP_038510Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008212 Genomic DNA. Translation: BAF20302.1. Sequence problems.
AK068614 mRNA. Translation: BAG90993.1.
AK120488 mRNA. Translation: BAH00037.1.
RefSeqiNP_001058388.1. NM_001064923.1.
UniGeneiOs.49601.

Genome annotation databases

GeneIDi4341870.
KEGGiosa:4341870.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008212 Genomic DNA. Translation: BAF20302.1 . Sequence problems.
AK068614 mRNA. Translation: BAG90993.1 .
AK120488 mRNA. Translation: BAH00037.1 .
RefSeqi NP_001058388.1. NM_001064923.1.
UniGenei Os.49601.

3D structure databases

ProteinModelPortali Q0DA21.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os06g46940.2.

Protein family/group databases

CAZyi GH1. Glycoside Hydrolase Family 1.

Proteomic databases

PRIDEi Q0DA21.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4341870.
KEGGi osa:4341870.

Organism-specific databases

Gramenei Q0DA21.

Phylogenomic databases

eggNOGi COG2723.
HOGENOMi HOG000088630.
KOi K01188.
OMAi SSWLHIV.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10353. PTHR10353. 1 hit.
Pfami PF00232. Glyco_hydro_1. 1 hit.
[Graphical view ]
PRINTSi PR00131. GLHYDRLASE1.
SUPFAMi SSF51445. SSF51445. 1 hit.
PROSITEi PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Nipponbare.
  4. "Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase."
    Opassiri R., Pomthong B., Onkoksoong T., Akiyama T., Esen A., Ketudat Cairns J.R.
    BMC Plant Biol. 6:33-33(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiBGL25_ORYSJ
AccessioniPrimary (citable) accession number: Q0DA21
Secondary accession number(s): B7EF46
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 14, 2014
This is version 54 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi