Q0D3J9 (C3H53_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Zinc finger CCCH domain-containing protein 53
Short name=OsC3H53

Gene names

Ordered Locus Names:	Os07g0682400, LOC_Os07g48410
ORF Names:	OSJNBa0008J01.35

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	682 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities	Contains 1 C3H1-type zinc finger. Contains 1 RRM (RNA recognition motif) domain.
Sequence caution	The sequence BAC80021.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Domain	Coiled coil Zinc-finger
Ligand	DNA-binding Metal-binding RNA-binding Zinc
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW RNA binding Inferred from electronic annotation. Source: UniProtKB-KW nucleotide binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 682	682	Zinc finger CCCH domain-containing protein 53		PRO_0000346846
Regions
	Domain	361 – 437	77	RRM
	Zinc finger	229 – 256	28	C3H1-type
	Coiled coil	485 – 521	37	Potential
	Compositional bias	76 – 82	7	Poly-Ala
	Compositional bias	314 – 319	6	Poly-Gln
	Compositional bias	325 – 330	6	Poly-Ala
Experimental info
	Sequence conflict	318	1	Q → R in AK119893. Ref.3

Sequences

	Sequence		Length	Mass (Da)
	Q0D3J9 [UniParc]. Last modified October 17, 2006. Version 1. Checksum: F248C731252CA232	FASTA	682	72,494
	10 20 30 40 50 60 MDAYEATKVV FSRIQALDPD HAAKIMGFLL IQDHGEKEMI RLAFGPEALL HTVMAKARKE 70 80 90 100 110 120 LGLLPASGPG TPTSVAAAAA AAHSPFMLSR QNSGRCGTAP SPLSVSSPSS WAPPPVFSRN 130 140 150 160 170 180 NSISNGAGEE MVGLGDELIS PANGGGPPSP FFGGDPLMDE LQLQDQLAFL NEGGVPAGHQ 190 200 210 220 230 240 MPMFDGGECR SPGGGDGGLF SYNLGWANGG PGHRRSASVS ELCLGGADGL GWKPCLYYAR 250 260 270 280 290 300 GYCKNGSACR FVHGGLPDDA AGKMDPSAVE QQCQDFLIRS KSQRLAAAAF PYSPTGSLPG 310 320 330 340 350 360 SPSAATKCLS LLLQQQQQQN ESQRAAAAAA LMLGGDEAHK FMGRPRLERA DFASMMNPGS 370 380 390 400 410 420 RQIYLTFPAD STFREEDVSN YFSIYGPVHD VRIPYQQKRM FGFVTFVYPE TVKLILAKGN 430 440 450 460 470 480 PHFICDARVL VKPYKEKGKV PDKYRKQHQP GERVDFSSCT TPTGLDARDP FDMHQLGARM 490 500 510 520 530 540 LQHSNSANEM LLRRKLEEQQ QAAELQQAIE LHSRRLMGLQ LLDFKSRAAA APTPIGNPFS 550 560 570 580 590 600 ASQTAANATG ESPPDSGELG KGSGFLLAHK KAVNGADKEE STGESSSPNT DSDQSVEHNL 610 620 630 640 650 660 PDSPFASPTK SAGFARDPFA PTEAEISATA STGCSATYVG INNGASNGGT NHLLPSALDM 670 680 PSPKPYFFPM SRLASDHGAI GM

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[3]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[4]	"Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice." Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C. BMC Genomics 9:44-44(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP005099 Genomic DNA. Translation: BAC80021.1. Sequence problems. AP008213 Genomic DNA. Translation: BAF22574.1. AK119893 mRNA. No translation available.
RefSeq	NP_001060660.1. NM_001067195.1.
UniGene	Os.56196.
3D structure databases
ProteinModelPortal	Q0D3J9.
ModBase	Search...
Proteomic databases
PRIDE	Q0D3J9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os07g48410.1; LOC_Os07g48410.1; LOC_Os07g48410. LOC_Os07g48410.2; LOC_Os07g48410.2; LOC_Os07g48410.
GeneID	4344312.
KEGG	osa:4344312.
Organism-specific databases
Gramene	Q0D3J9.
Phylogenomic databases
eggNOG	NOG276617.
OMA	NQTTERE.
ProtClustDB	CLSN2693894.
Gene expression databases
ArrayExpress	Q0D3J9.
Family and domain databases
Gene3D	3.30.70.330. 1 hit.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. IPR000571. Znf_CCCH. [Graphical view]
Pfam	PF00642. zf-CCCH. 1 hit. [Graphical view]
SMART	SM00360. RRM. 1 hit. SM00356. ZnF_C3H1. 1 hit. [Graphical view]
PROSITE	PS50102. RRM. 1 hit. PS50103. ZF_C3H1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3H53_ORYSJ

Accession

Primary (citable) accession number: Q0D3J9
Secondary accession number(s): Q7XHV6

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	October 17, 2006
Last modified:	April 3, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program