Q0C4E1 (Q0C4E1_HYPNA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribonuclease, Rne/Rng family EMBL ABI78378.1

Gene names

Ordered Locus Names:

HNE_0673

Organism

Hyphomonas neptunium (strain ATCC 15444) [Complete proteome] [HAMAP] EMBL ABI78378.1

Taxonomic identifier

228405 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Hyphomonadaceae › Hyphomonas › Hyphomonas neptunium

Protein attributes

Sequence length	909 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	RNA processing Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0C4E1 [UniParc]. Last modified October 17, 2006. Version 1. Checksum: 4EF915DE16F3BF85	FASTA	909	98,542
	10 20 30 40 50 60 MSRLMLIDAA HPEETRVAIV NNGQVDDFDF EATGNEQLRG NIYLAKVTRV EPSLQAAFVE 70 80 90 100 110 120 YGGNRHGFLA FSEIHPDYYQ LPAADRELLL KEAAEEAAAA IEDDDDGPYV PHGMSSEMGN 130 140 150 160 170 180 GASDEGDEDD DHGDDGDEDT ASADDDGEDE GDDAAPRAAK PARRNAKKQT QRTPISKRYK 190 200 210 220 230 240 IQEVIRRRQV MLVQVVKEER GNKGAALTTY LSLAGRYSVL MPNTPRGGGI SRKIVNSADR 250 260 270 280 290 300 KRLKSIVSEL DVPEGQGLIV RTAGAKRTKI EIKRDYDYLS KLWEQIVEKT LSSEAPALIN 310 320 330 340 350 360 AEGGLVHRAM RDMFDKEIEE VWVQGDEAYR EAKDLAKIIM PSQAKKVQQW REEDPLYVAE 370 380 390 400 410 420 AVENQLDSIY SPVVQLKSGG YLVINQTEAL VAIDVNSGKS TRERNIEQTA VRTNLEAAEE 430 440 450 460 470 480 ACRQMRLRDL AGLIVIDFID MEENKNNRAV EKRLKECLKV DRARVQHGRI SQFGLMEISR 490 500 510 520 530 540 QRRRQGVLQA TSDPCSACNG TGRRRSIPSA ALQLIRAIEA RAATGGLKGI GVKAPTDVAL 550 560 570 580 590 600 YILNNKREAL IEIERLAGFA ISIHSSEDML PGDFQIDADR DPNAKPKKRS TPRSLMKPTP 610 620 630 640 650 660 PSARDDDDEE IDDEDVIEDE AGEDDDGETP AAAANKDKQG GGRRRRRRGG RNRGEARETG 670 680 690 700 710 720 LEVVDAEPAA DADASEDDDD EDDGEDTSNG SAEAGSDDSD AARKRRRRGR RGGRRRRRGG 730 740 750 760 770 780 EGRGENGDIA AIADGGAFLD GLSVSADVML SEDEPAIGLP AAADTQDTDD ESETKAAPAE 790 800 810 820 830 840 AAADAAETDE APAATEEAAP RPARSRSRRG RGSKPAPEET PSAEETAPAA EAEAEAEAEA 850 860 870 880 890 900 PVVEAAQEAA PEPVAEAEPE PEMAQADFAP PKAAAVEAEP APEPEGAPAP SAAEPPAPKR AGWWNRGKK

References

[1]

"Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus." Badger J.H., Hoover T.R., Brun Y.V., Weiner R.M., Laub M.T., Alexandre G., Mrazek J., Ren Q., Paulsen I.T., Nelson K.E., Khouri H.M., Radune D., Sosa J., Dodson R.J., Sullivan S.A., Rosovitz M.J., Madupu R., Brinkac L.M. , Durkin A.S., Daugherty S.C., Kothari S.P., Giglio M.G., Zhou L., Haft D.H., Selengut J.D., Davidsen T.M., Yang Q., Zafar N., Ward N.L. J. Bacteriol. 188:6841-6850(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 15444.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000158 Genomic DNA. Translation: ABI78378.1.
RefSeq	YP_759402.1. NC_008358.1.
3D structure databases
ProteinModelPortal	Q0C4E1.
SMR	Q0C4E1. Positions 40-79.
ModBase	Search...
Protein-protein interaction databases
STRING	228405.HNE_0673.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI78378; ABI78378; HNE_0673.
GeneID	4289962.
KEGG	hne:HNE_0673.
PATRIC	32214152. VBIHypNep17450_0680.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1530.
HOGENOM	HOG000258026.
KO	K08300.
OMA	MGIILRT.
ProtClustDB	CLSK2532104.
Enzyme and pathway databases
BioCyc	HNEP228405:GI69-716-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 2 hits.
InterPro	IPR012340. NA-bd_OB-fold. IPR003029. Rbsml_prot_S1_RNA-bd_dom. IPR019307. RNA-bd_AU-1/RNase_E/G. IPR022967. RNA-binding_domain_S1. IPR004659. RNase_E/G. [Graphical view]
Pfam	PF10150. RNase_E_G. 1 hit. PF00575. S1. 1 hit. [Graphical view]
SMART	SM00316. S1. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00757. RNaseEG. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0C4E1_HYPNA

Accession

Primary (citable) accession number: Q0C4E1

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	May 1, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)