Q0C3J2 (Q0C3J2_HYPNA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV, B subunit EMBL ABI76622.1
EC=5.99.1.- EMBL ABI76622.1

Gene names

Name:	parE EMBL ABI76622.1
Ordered Locus Names:	HNE_0976

Organism

Hyphomonas neptunium (strain ATCC 15444) [Complete proteome] [HAMAP] EMBL ABI76622.1

Taxonomic identifier

228405 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Hyphomonadaceae › Hyphomonas

Protein attributes

Sequence length	665 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Isomerase EMBL ABI76622.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0C3J2 [UniParc]. Last modified October 17, 2006. Version 1. Checksum: 18F426051258D7C9	FASTA	665	73,223
	10 20 30 40 50 60 MSSARQMKQD DLLAGTAGYS AKDIEVLEGL EPVRKRPGMY IGGTDERAWH HLFAEVLDNA 70 80 90 100 110 120 MDEAVAGYAN RIDIKLDADG FLTVVDNGRG IPIDPHPKFP KKSALEVIMT TLHSGGKFSD 130 140 150 160 170 180 KAYSTAGGLH GVGISVVNAL SELVEVEVAR DRTLYRQDFS RGLPLGKLQK VGAAPNRRGT 190 200 210 220 230 240 SVRFKPDFQI FGDKLRWRPQ RLFQMARSKA YLFRGVEVRW SCDPELLPED SKVPAEAVLS 250 260 270 280 290 300 YPNGLADQLT EVFGDKSTIT ETPFTGLVDM GAEGKVEWAI AWTQAGFGEA DGFARSYCNT 310 320 330 340 350 360 IPTPEGGTHE AGFRSAITKG IRNFGDLTGN KKAAEVTAED VMGHSGLLLS VFIRGPEFVG 370 380 390 400 410 420 QTKDKLSSTH AFRLVENAVR DHFDHWLAGS PKEANKLLGW AIDRADERAK RRKAKEISRK 430 440 450 460 470 480 SATKKLRLPG KLADCSAKGP EGTELFLVEG DSAGGSAKQA RNRETQAILP LRGKILNVES 490 500 510 520 530 540 ASDDKLMGNQ ELADLSLALG TELGRKFNID DLRYERIIIM TDADVDGAHI AALLITFFYR 550 560 570 580 590 600 LTPGLIESGR LYLALPPLFK LSNKGNIHYA MDDADRARIM KEHFKGNQKV EMTRFKGLGE 610 620 630 640 650 660 MNPAQLKETT MNPSSRTLAR VTLPAAMDDL EINPADLINT LMGKKAELRF RFIQENAAFV EELDI

References

[1]

"Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus." Badger J.H., Hoover T.R., Brun Y.V., Weiner R.M., Laub M.T., Alexandre G., Mrazek J., Ren Q., Paulsen I.T., Nelson K.E., Khouri H.M., Radune D., Sosa J., Dodson R.J., Sullivan S.A., Rosovitz M.J., Madupu R., Brinkac L.M. , Durkin A.S., Daugherty S.C., Kothari S.P., Giglio M.G., Zhou L., Haft D.H., Selengut J.D., Davidsen T.M., Yang Q., Zafar N., Ward N.L. J. Bacteriol. 188:6841-6850(2006) [PubMed: 16980487] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000158 Genomic DNA. Translation: ABI76622.1.
RefSeq	YP_759701.1. NC_008358.1.
3D structure databases
ProteinModelPortal	Q0C3J2.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0C3J2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4287106.
GenomeReviews	Gene locus HNE_0976 in contig CP000158_GR.
KEGG	hne:HNE_0976.
NMPDR	fig|228405.5.peg.952.
PATRIC	32214757. VBIHypNep17450_0980.
TIGR	HNE_0976.
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
PhylomeDB	Q0C3J2.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0C3J2_HYPNA

Accession

Primary (citable) accession number: Q0C3J2

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	January 25, 2012
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)