Q0C2E8 (Q0C2E8_HYPNA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Ordered Locus Names:

HNE_1378

Organism

Hyphomonas neptunium (strain ATCC 15444) [Complete proteome] [HAMAP] EMBL ABI76540.1

Taxonomic identifier

228405 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Hyphomonadaceae › Hyphomonas › Hyphomonas neptunium

Protein attributes

Sequence length	178 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887

Ontologies

Keywords
Molecular function	Isomerase SAAS SAAS000748 RuleBase RU003887
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0C2E8 [UniParc]. Last modified October 17, 2006. Version 1. Checksum: 1D7BAC327E992247	FASTA	178	20,075
	10 20 30 40 50 60 MTLILFNKPY GVLSQFTDEG SGKRTLKEFI ALPGVYPAGR LDFDSEGLLI LTDDGREQAR 70 80 90 100 110 120 IADPKHKIPK TYLAQVEGIP SEEALQALRK GVDLKDGRTR PATARLAAEP ENLWPRDPPI 130 140 150 160 170 RYRKSVPDTW IELTITEGRN RQVRRMTAAA GHPTLRLIRL RIGDWDLENL PPGAWRKA

References

[1]

"Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus." Badger J.H., Hoover T.R., Brun Y.V., Weiner R.M., Laub M.T., Alexandre G., Mrazek J., Ren Q., Paulsen I.T., Nelson K.E., Khouri H.M., Radune D., Sosa J., Dodson R.J., Sullivan S.A., Rosovitz M.J., Madupu R., Brinkac L.M. , Durkin A.S., Daugherty S.C., Kothari S.P., Giglio M.G., Zhou L., Haft D.H., Selengut J.D., Davidsen T.M., Yang Q., Zafar N., Ward N.L. J. Bacteriol. 188:6841-6850(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 15444.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000158 Genomic DNA. Translation: ABI76540.1.
RefSeq	YP_760095.1. NC_008358.1.
3D structure databases
ProteinModelPortal	Q0C2E8.
SMR	Q0C2E8. Positions 3-177.
ModBase	Search...
Protein-protein interaction databases
STRING	228405.HNE_1378.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI76540; ABI76540; HNE_1378.
GeneID	4288934.
KEGG	hne:HNE_1378.
PATRIC	32215575. VBIHypNep17450_1382.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
HOGENOM	HOG000044955.
KO	K06181.
OMA	TWIELSI.
Enzyme and pathway databases
BioCyc	HNEP228405:GI69-1412-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0C2E8_HYPNA

Accession

Primary (citable) accession number: Q0C2E8

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)