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Q0BUJ8

- RF1_GRABC

UniProt

Q0BUJ8 - RF1_GRABC

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Protein
Peptide chain release factor 1
Gene
prfA, GbCGDNIH1_0606
Organism
Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA By similarity.UniRule annotation

GO - Molecular functioni

  1. translation release factor activity, codon specific Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

Protein biosynthesis

Enzyme and pathway databases

BioCyciGBET391165:GHON-619-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Peptide chain release factor 1
Short name:
RF-1
Gene namesi
Name:prfA
Ordered Locus Names:GbCGDNIH1_0606
OrganismiGranulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Taxonomic identifieri391165 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesAcetobacteraceaeGranulibacter
ProteomesiUP000001963: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 352352Peptide chain release factor 1UniRule annotation
PRO_0000263281Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei229 – 2291N5-methylglutamine By similarity

Post-translational modificationi

Methylated by PrmC. Methylation increases the termination efficiency of RF1 By similarity.UniRule annotation

Keywords - PTMi

Methylation

Interactioni

Protein-protein interaction databases

STRINGi391165.GbCGDNIH1_0606.

Structurei

3D structure databases

ProteinModelPortaliQ0BUJ8.
SMRiQ0BUJ8. Positions 89-348.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0216.
HOGENOMiHOG000074815.
KOiK02835.
OMAiYGQLKFE.
OrthoDBiEOG6TN48J.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
HAMAPiMF_00093. Rel_fac_1.
InterProiIPR014720. dsRNA-bd_dom.
IPR005139. PCRF.
IPR000352. Pep_chain_release_fac_I_II.
IPR004373. PrfA.
[Graphical view]
PfamiPF03462. PCRF. 1 hit.
PF00472. RF-1. 1 hit.
[Graphical view]
SMARTiSM00937. PCRF. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00019. prfA. 1 hit.
PROSITEiPS00745. RF_PROK_I. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0BUJ8-1 [UniParc]FASTAAdd to Basket

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MSFTANLDRI VARAEELRAS LSEGLNGDSF AAASRELAEL EPVVARIEEL    50
WAAERGLAEA EAMLADPDMR ELAESEAEIL REKLPSLTRE IRIALLPKDE 100
ADERSAILEI RPAAGGDEAS LFAAQLFSMY QRYAEIRGWR FEILEYDDTG 150
LGGLKGGMAE ITGRSVFARL KYESGVHRVQ RVPATESQGR IHTSTVTVAV 200
LPEAEDVDVQ VDEGDLRIDV YRASGAGGQH VNKTESAVRI THLPSGIVVA 250
MQEEKSQHKN RAKAMKILKA RLYEQQRAAL HASRAADRRA QVGTGDRSER 300
IRTYNFPQGR VSDHRINLTL YKIDRVMLGE LDDFVDALTA EDQAARLSAQ 350
EL 352
Length:352
Mass (Da):39,011
Last modified:October 17, 2006 - v1
Checksum:iA3816F05C06376CB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000394 Genomic DNA. Translation: ABI61504.1.
RefSeqiYP_744427.1. NC_008343.1.

Genome annotation databases

EnsemblBacteriaiABI61504; ABI61504; GbCGDNIH1_0606.
GeneIDi4274965.
KEGGigbe:GbCGDNIH1_0606.
PATRICi22077289. VBIGraBet83793_0635.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000394 Genomic DNA. Translation: ABI61504.1 .
RefSeqi YP_744427.1. NC_008343.1.

3D structure databases

ProteinModelPortali Q0BUJ8.
SMRi Q0BUJ8. Positions 89-348.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 391165.GbCGDNIH1_0606.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI61504 ; ABI61504 ; GbCGDNIH1_0606 .
GeneIDi 4274965.
KEGGi gbe:GbCGDNIH1_0606.
PATRICi 22077289. VBIGraBet83793_0635.

Phylogenomic databases

eggNOGi COG0216.
HOGENOMi HOG000074815.
KOi K02835.
OMAi YGQLKFE.
OrthoDBi EOG6TN48J.

Enzyme and pathway databases

BioCyci GBET391165:GHON-619-MONOMER.

Family and domain databases

Gene3Di 3.30.160.20. 1 hit.
HAMAPi MF_00093. Rel_fac_1.
InterProi IPR014720. dsRNA-bd_dom.
IPR005139. PCRF.
IPR000352. Pep_chain_release_fac_I_II.
IPR004373. PrfA.
[Graphical view ]
Pfami PF03462. PCRF. 1 hit.
PF00472. RF-1. 1 hit.
[Graphical view ]
SMARTi SM00937. PCRF. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00019. prfA. 1 hit.
PROSITEi PS00745. RF_PROK_I. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis."
    Greenberg D.E., Porcella S.F., Zelazny A.M., Virtaneva K., Sturdevant D.E., Kupko J.J. III, Barbian K.D., Babar A., Dorward D.W., Holland S.M.
    J. Bacteriol. 189:8727-8736(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1260 / CGDNIH1.

Entry informationi

Entry nameiRF1_GRABC
AccessioniPrimary (citable) accession number: Q0BUJ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: October 17, 2006
Last modified: May 14, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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