Q0BSF0 (PDXY_GRABC) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 32.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Pyridoxamine kinase Short name=PM kinase EC=2.7.1.35 | ||||
| Gene names |
| ||||
| Organism | Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 391165 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Granulibacter |
Protein attributes
| Sequence length | 286 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxamine By similarity. HAMAP MF_01639 |
| Catalytic activity | ATP + pyridoxal = ADP + pyridoxal 5'-phosphate. HAMAP MF_01639 |
| Sequence similarities | Belongs to the pyridoxine kinase family. |
| Sequence caution | The sequence ABI62252.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Ligand | ATP-binding Metal-binding Nucleotide-binding Zinc |
| Molecular function | Kinase Transferase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | pyridoxal 5'-phosphate salvage Inferred from electronic annotation. Source: InterPro |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW metal ion bindingInferred from electronic annotation. Source: UniProtKB-KW pyridoxal kinase activityInferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 286 | 286 | Pyridoxamine kinase HAMAP MF_01639 | PRO_0000269811 | |||||
Sites | |||||||||
| Binding site | 8 | 1 | Substrate By similarity | ||||||
| Binding site | 43 | 1 | Substrate By similarity | ||||||
| Binding site | 223 | 1 | Substrate By similarity | ||||||
Sequences
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References
| [1] | "Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis." Greenberg D.E., Porcella S.F., Zelazny A.M., Virtaneva K., Sturdevant D.E., Kupko J.J. III, Barbian K.D., Babar A., Dorward D.W., Holland S.M. J. Bacteriol. 189:8727-8736(2007) [PubMed: 17827295] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1260 / CGDNIH1. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000394 Genomic DNA. Translation: ABI62252.1. Different initiation. |
| RefSeq | YP_745175.1. NC_008343.1. |
3D structure databases | |
| ProteinModelPortal | Q0BSF0. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q0BSF0. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 4275222. |
| GenomeReviews | Gene locus GbCGDNIH1_1354 in contig CP000394_GR. |
| KEGG | gbe:GbCGDNIH1_1354. |
| NMPDR | fig|391165.8.peg.1341. |
| PATRIC | 22078883. VBIGraBet83793_1404. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG2240. |
| HOGENOM | HBG661459. |
| PhylomeDB | Q0BSF0. |
| ProtClustDB | PRK05756. |
Enzyme and pathway databases | |
| BioCyc | GBET391165:GBCGDNIH1_1354-MONOMER. |
Family and domain databases | |
| HAMAP | MF_01639. PdxY. [Tree] |
| InterPro | IPR013749. HMP-P_kinase-1. IPR004625. PyrdxlP_synth_PyrdxlKinase. IPR023685. Pyridoxal_kinase_PdxY. [Graphical view] |
| KO | K00868. |
| PANTHER | PTHR10534. PTHR10534. 1 hit. |
| Pfam | PF08543. Phos_pyr_kin. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00687. Pyridox_kin. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | PDXY_GRABC | ||||||||
| Accession | Primary (citable) accession number: Q0BSF0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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