Allophanate hydrolase - Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)

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Q0BRB0 (Q0BRB0_GRABC) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 47. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Allophanate hydrolase EMBL ABI62642.1
EC=3.5.1.54 EMBL ABI62642.1

Gene names

Ordered Locus Names:

GbCGDNIH1_1744

Organism

Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) [Complete proteome] [HAMAP] EMBL ABI62642.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Granulibacter ›

Protein attributes

Sequence length	592 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABI62642.1
Technical term	3D-structure PDB 4GYR PDB 4GYS Complete proteome
Gene Ontology (GO)
Molecular_function	allophanate hydrolase activity Inferred from electronic annotation. Source: EC carbon-nitrogen ligase activity, with glutamine as amido-N-donor Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q0BRB0 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: 063BB2E111F91A59
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592

63,014

        10         20         30         40         50         60 
MTLSMTLEGI QAFLAQGGTI EQVVTEAYDR ITRYGDKAVW IALRPREEVL AEARALDASP 

        70         80         90        100        110        120 
ATGKPLYGVP FAVKDNIDVA GLPCSAACPA FTYEPDRDAT VVARLRAAGA IVLGKTNLDQ 

       130        140        150        160        170        180 
FATGLVGTRS PFGAPRCVFD QDYISGGSSS GSAVAVAAGL VAFSLGTDTA GSGRVPAAFN 

       190        200        210        220        230        240 
NLVGVKPTKG LLSTSGVVPA CRSLDCVTVF AASVAEGTLI RRIAEGYDAA DPYSRPSQKR 

       250        260        270        280        290        300 
RLPHVGLRVG VPRQDQREFY GNTAYAALYQ RALDEMISLD AELVEIDFAP FRDAAKLLYG 

       310        320        330        340        350        360 
GPWVAERLEA VGDHLSRAPD SFDPVVRSIV ETAKTLSAVD AFRGQYELAA LTQQANAQWA 

       370        380        390        400        410        420 
RMDILLLPTA PTIHKVEAVM ADPVRLNSQL GHYTNFVNLL DCAAIAVPAG FIETGLPFGV 

       430        440        450        460        470        480 
TLVGPAFSDD SMALIADRLH RRLEPGYGQD RASLPDPVLE ETNPEQIALA VVGAHLSGQP 

       490        500        510        520        530        540 
LHWQLTERNA TLVARTRTAP EYRLYALAET IPPKPGLVAD PDFTGDGIEI ELWSMDAEAF 

       550        560        570        580        590 
GTFTALVPAP LAIGTLRLAD GTSVKGFVCE PAGLVGAQDI TRFGGWRAYL AQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis." Greenberg D.E., Porcella S.F., Zelazny A.M., Virtaneva K., Sturdevant D.E., Kupko J.J. III, Barbian K.D., Babar A., Dorward D.W., Holland S.M. J. Bacteriol. 189:8727-8736(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1260 / CGDNIH1.
[2]	"The structure of allophanate hydrolase from Granulibacter bethesdensis provides insights into substrate specificity in the amidase signature family." Lin Y., St Maurice M. Biochemistry 52:690-700(2013) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000394 Genomic DNA. Translation: ABI62642.1.

RefSeq

YP_745565.1. NC_008343.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4GYR	X-ray	2.80	A/B	1-592	[»]
4GYS	X-ray	2.20	A/B	1-592	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

391165.GbCGDNIH1_1744.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABI62642; ABI62642; GbCGDNIH1_1744.

GeneID

KEGG

gbe:GbCGDNIH1_1744.

PATRIC

22079691. VBIGraBet83793_1803.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

Enzyme and pathway databases

BioCyc

GBET391165:GHON-1785-MONOMER.

Family and domain databases

Gene3D

3.90.1300.10. 1 hit.

InterPro

IPR014085. Allophanate_hydrolase.
IPR000120. Amidase.
IPR023631. Amidase_dom.
[Graphical view]

PANTHER

PTHR11895. PTHR11895. 1 hit.

Pfam

PF01425. Amidase. 1 hit.
[Graphical view]

SUPFAM

SSF75304. Amidase_sig_enz. 1 hit.

TIGRFAMs

TIGR02713. allophanate_hyd. 1 hit.

ProtoNet

Entry information

Entry name

Q0BRB0_GRABC

Accession

Primary (citable) accession number: Q0BRB0

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	May 29, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info