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Q0BJL9

- ATPF_BURCM

UniProt

Q0BJL9 - ATPF_BURCM

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Protein

ATP synthase subunit b

Gene

atpF

Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation.UniRule annotation
Component of the F0 channel, it forms part of the peripheral stalk, linking F1 to F0.UniRule annotation

GO - Molecular functioni

  1. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

GO - Biological processi

  1. plasma membrane ATP synthesis coupled proton transport Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Enzyme and pathway databases

BioCyciBAMB339670:GH48-95-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit bUniRule annotation
Alternative name(s):
ATP synthase F(0) sector subunit bUniRule annotation
ATPase subunit IUniRule annotation
F-type ATPase subunit bUniRule annotation
Short name:
F-ATPase subunit bUniRule annotation
Gene namesi
Name:atpFUniRule annotation
Ordered Locus Names:Bamb_0093
OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Taxonomic identifieri339670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000662: Chromosome 1

Subcellular locationi

Cell inner membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2923HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-HAMAP
  3. proton-transporting ATP synthase complex, coupling factor F(o) Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, CF(0), Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 156156ATP synthase subunit bPRO_0000368378Add
BLAST

Interactioni

Subunit structurei

F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. F0 has three main subunits: a1, b2 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.UniRule annotation

Protein-protein interaction databases

STRINGi339670.Bamb_0093.

Structurei

3D structure databases

ProteinModelPortaliQ0BJL9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase B chain family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0711.
HOGENOMiHOG000015378.
KOiK02109.
OMAiVNAQVHA.
OrthoDBiEOG6DNTDK.

Family and domain databases

Gene3Di1.20.5.620. 1 hit.
HAMAPiMF_01398. ATP_synth_b_bact.
InterProiIPR028987. ATPase_B-like_membr.
IPR002146. ATPase_F0-cplx_b/b'su_bac.
IPR005864. ATPase_F0-cplx_bsu_bac.
[Graphical view]
PfamiPF00430. ATP-synt_B. 1 hit.
[Graphical view]
SUPFAMiSSF81573. SSF81573. 1 hit.
TIGRFAMsiTIGR01144. ATP_synt_b. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0BJL9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNLNATLFAQ MVVFLVLAWF TMKFVWPPLI NALDERSKKI ADGLAAAEKG
60 70 80 90 100
KAELDAAHKR VDQELAQARN DGQQRIADAE KRAQAVAEEI KANAQAEAAR
110 120 130 140 150
IVAQAKAEAE QQIVKAREAL RGEVASLAVK GAEQILKREV DQTAHAQLLN

QLKAEL
Length:156
Mass (Da):17,078
Last modified:October 17, 2006 - v1
Checksum:iD5926C2280139075
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000440 Genomic DNA. Translation: ABI85654.1.
RefSeqiYP_771988.1. NC_008390.1.

Genome annotation databases

EnsemblBacteriaiABI85654; ABI85654; Bamb_0093.
GeneIDi4311221.
KEGGibam:Bamb_0093.
PATRICi19015628. VBIBurAmb61564_0142.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000440 Genomic DNA. Translation: ABI85654.1 .
RefSeqi YP_771988.1. NC_008390.1.

3D structure databases

ProteinModelPortali Q0BJL9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 339670.Bamb_0093.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI85654 ; ABI85654 ; Bamb_0093 .
GeneIDi 4311221.
KEGGi bam:Bamb_0093.
PATRICi 19015628. VBIBurAmb61564_0142.

Phylogenomic databases

eggNOGi COG0711.
HOGENOMi HOG000015378.
KOi K02109.
OMAi VNAQVHA.
OrthoDBi EOG6DNTDK.

Enzyme and pathway databases

BioCyci BAMB339670:GH48-95-MONOMER.

Family and domain databases

Gene3Di 1.20.5.620. 1 hit.
HAMAPi MF_01398. ATP_synth_b_bact.
InterProi IPR028987. ATPase_B-like_membr.
IPR002146. ATPase_F0-cplx_b/b'su_bac.
IPR005864. ATPase_F0-cplx_bsu_bac.
[Graphical view ]
Pfami PF00430. ATP-synt_B. 1 hit.
[Graphical view ]
SUPFAMi SSF81573. SSF81573. 1 hit.
TIGRFAMsi TIGR01144. ATP_synt_b. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia cepacia AMMD."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-244 / AMMD.

Entry informationi

Entry nameiATPF_BURCM
AccessioniPrimary (citable) accession number: Q0BJL9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: October 17, 2006
Last modified: October 29, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3