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Protein
Submitted name:

Methyl-accepting chemotaxis (MCP) signaling domain protein

Gene

Bamb_1247

Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciBAMB339670:GH48-1285-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Methyl-accepting chemotaxis (MCP) signaling domain proteinImported
Submitted name:
Methyl-accepting chemotaxis sensory transducerImported
Gene namesi
Ordered Locus Names:Bamb_1247Imported
ORF Names:CH72_291Imported
OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))Imported
Taxonomic identifieri339670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000662 Componenti: Chromosome 1 UP000032631 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 PotentialImportedAdd
BLAST
Chaini24 – 609586 PotentialImportedPRO_5000127361Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi339670.Bamb_1247.

Structurei

3D structure databases

ProteinModelPortaliQ0BGB8.
SMRiQ0BGB8. Positions 375-600.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000148074.
KOiK03406.
OMAiARIVATC.
OrthoDBiEOG6G4VQG.

Family and domain databases

InterProiIPR004010. Cache_domain.
IPR004090. Chemotax_Me-accpt_rcpt.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
IPR029151. Sensor-like.
[Graphical view]
PfamiPF02743. Cache_1. 1 hit.
PF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0BGB8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSSIRARIV ATCVAIVVTA LAVTGGLVYQ VVKRHNDETI DRNLQSVLAG
60 70 80 90 100
HALALDEWVA GRAQQTQALA DTLAVGEGDP LPALTLLGKS GGFQVLTLGL
110 120 130 140 150
PDHTAFSNIP LAPGYDPTAR PWYKQAVEAG RLVVTALYQD ASTGKPAFAF
160 170 180 190 200
AVPIMRGGTL KGVLAASLYM ERASAIVASM HPTPASFAFL VDRGGRLIAG
210 220 230 240 250
AKTDLIMKPA VQLSPELTPE HLASLQSASE PVAIAVDGVT KLLRAQPIAG
260 270 280 290 300
TDWSLVMALD RSDVTAGMRA VATTTLVAIV IVACIAAALV GALTNAAFKR
310 320 330 340 350
VLLVRDALTD VASGSGDLTK RLRADGNDEA AQIARAFNLF AEKISAILLQ
360 370 380 390 400
IRGFSESVSV ASAEIAQGNQ DLSGRTEHAA SSLQETAAAL EEIAGTARNS
410 420 430 440 450
ADAATQVNRL AESASGVAMR GGEVVSQVVA TMGEITAASN EISNIIGVID
460 470 480 490 500
GIAFQTNILA LNAAVEAARA NEHGRGFAVV AGEVRTLAQR SAQAAKEIKQ
510 520 530 540 550
LIQASVDKIE GGSGLVHTAG ATMDEIVEGV RGITSVIAEM TVAANEQSTG
560 570 580 590 600
LAQVNQAVSQ LDHSTQQNAA LVEESAAAAA LLREQAAQLA QIVGEFKLAQ

PQTADTARV
Length:609
Mass (Da):62,855
Last modified:October 17, 2006 - v1
Checksum:i30EBBCE09D25A58C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000440 Genomic DNA. Translation: ABI86805.1.
CP009798 Genomic DNA. Translation: AJY21419.1.
RefSeqiWP_011656569.1. NC_008390.1.
YP_773139.1. NC_008390.1.

Genome annotation databases

EnsemblBacteriaiABI86805; ABI86805; Bamb_1247.
KEGGibam:Bamb_1247.
PATRICi19018072. VBIBurAmb61564_1330.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000440 Genomic DNA. Translation: ABI86805.1.
CP009798 Genomic DNA. Translation: AJY21419.1.
RefSeqiWP_011656569.1. NC_008390.1.
YP_773139.1. NC_008390.1.

3D structure databases

ProteinModelPortaliQ0BGB8.
SMRiQ0BGB8. Positions 375-600.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi339670.Bamb_1247.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI86805; ABI86805; Bamb_1247.
KEGGibam:Bamb_1247.
PATRICi19018072. VBIBurAmb61564_1330.

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000148074.
KOiK03406.
OMAiARIVATC.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciBAMB339670:GH48-1285-MONOMER.

Family and domain databases

InterProiIPR004010. Cache_domain.
IPR004090. Chemotax_Me-accpt_rcpt.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
IPR029151. Sensor-like.
[Graphical view]
PfamiPF02743. Cache_1. 1 hit.
PF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome 1 of Burkholderia cepacia AMMD."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-244 / AMMD.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AMMDImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AMMDImported.

Entry informationi

Entry nameiQ0BGB8_BURCM
AccessioniPrimary (citable) accession number: Q0BGB8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: May 27, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.