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Q0BFY1 (Q0BFY1_BURCM) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
tRNA pseudouridine synthase B HAMAP-Rule MF_01080

EC=5.4.99.25 HAMAP-Rule MF_01080
Alternative name(s):
tRNA pseudouridine(55) synthase HAMAP-Rule MF_01080
tRNA pseudouridylate synthase HAMAP-Rule MF_01080
tRNA-uridine isomerase HAMAP-Rule MF_01080
Gene names
Name:truB HAMAP-Rule MF_01080
Ordered Locus Names:Bamb_1384 EMBL ABI86942.1
OrganismBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) [Complete proteome] [HAMAP] EMBL ABI86942.1
Taxonomic identifier339670 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex

Protein attributes

Sequence length310 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs By similarity. HAMAP-Rule MF_01080 SAAS SAAS002501

Catalytic activity

tRNA uridine55 = tRNA pseudouridine55. HAMAP-Rule MF_01080 SAAS SAAS002501

Sequence similarities

Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. HAMAP-Rule MF_01080

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site531Nucleophile By similarity HAMAP-Rule MF_01080

Sequences

Sequence LengthMass (Da)Tools
Q0BFY1 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: F34B30527D4ABD0B

FASTA31033,222
        10         20         30         40         50         60 
MTNAASQRPR VPRRALDGVL LLDKPVGLSS NDALIRAKRL LLAKKAGHTG TLDPLASGLL 

        70         80         90        100        110        120 
PLCFGEATKF SQDLLEADKT YEATMRLGVR TTTGDAEGDV LDTRAVECDR AAVEAALARF 

       130        140        150        160        170        180 
TGEIVQVPPM YSALKRDGKP LYEYARAGQT VEREGRNVTI LALDLLACEL PDVTFRVTCS 

       190        200        210        220        230        240 
KGTYVRTLAE DIGEALGCGA HLTMLRRTGV GALTLEHAVT LDALSDADEA ARDAWLQPVD 

       250        260        270        280        290        300 
ALLSTFPLVR LDEAGAKRFL HGQRLPLSAL DPIDAAEGER VRVYDAARLL GVARKANGVL 

       310 
APERLVVTAA 

« Hide

References

[1]"Complete sequence of chromosome 1 of Burkholderia cepacia AMMD."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-244 / AMMD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000440 Genomic DNA. Translation: ABI86942.1.
RefSeqYP_773276.1. NC_008390.1.

3D structure databases

ProteinModelPortalQ0BFY1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING339670.Bamb_1384.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI86942; ABI86942; Bamb_1384.
GeneID4309608.
KEGGbam:Bamb_1384.
PATRIC19018362. VBIBurAmb61564_1473.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0130.
HOGENOMHOG000231225.
KOK03177.
OMAQKVKRIF.
OrthoDBEOG6358D3.
ProtClustDBPRK01851.

Enzyme and pathway databases

BioCycBAMB339670:GH48-1424-MONOMER.

Family and domain databases

Gene3D2.30.130.10. 1 hit.
HAMAPMF_01080. TruB_bact.
InterProIPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR015947. PUA-like_domain.
IPR014780. tRNA_psdUridine_synth_TruB.
IPR015240. tRNA_sdUridine_synth_fam1_C.
[Graphical view]
PANTHERPTHR13767. PTHR13767. 1 hit.
PfamPF09157. TruB-C_2. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsTIGR00431. TruB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ0BFY1_BURCM
AccessionPrimary (citable) accession number: Q0BFY1
Entry history
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: February 19, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)