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Q0BAT2 (Q0BAT2_BURCM) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length865 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP-independent breakage of single-stranded DNA, followed by passage and rejoining. RuleBase RU000518

Sequence similarities

Belongs to the type IA topoisomerase family. RuleBase RU004206

Ontologies

Keywords
   LigandDNA-binding RuleBase RU000518
   Molecular functionIsomerase
Topoisomerase RuleBase RU000518
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA topological change

Inferred from electronic annotation. Source: InterPro

   Cellular_componentchromosome

Inferred from electronic annotation. Source: InterPro

   Molecular_functionDNA topoisomerase type I activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q0BAT2 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: F711C7FB8357E6D5

FASTA86596,606
        10         20         30         40         50         60 
MSKALIIAEK PSVANDIARA LGGFTKHDEY FESDEFVLSS AVGHLLEIAA PEEYEVKRGK 

        70         80         90        100        110        120 
WSFAHLPVIP PHFDLNPIAK SESRLKVLTK LMKRKDVDRL INACDAGREG ELIFRLIVQH 

       130        140        150        160        170        180 
AKAKQPVQRL WLQSMTPQAI RDGFAHLRSD TDMQPLADAA RCRSEADWLV GINGTRAMTA 

       190        200        210        220        230        240 
FNSKGGGFFL TTVGRVQTPT LSIVVEREEK IRRFVPRDYW EVKAAFACAN GFYEGKWYDP 

       250        260        270        280        290        300 
KFKRDEFDPE RRDSRLWSLP AAETIVAACR DQVGTVSEES KPSTQLSPLL FDLTSLQREA 

       310        320        330        340        350        360 
NSRFGFSAKN TLGLAQALYE KHKVLTYPRT DARALPEDYI STVQSTLEML KESHNYLPHA 

       370        380        390        400        410        420 
KRVLDQGWVK PNKRIFDNSK ISDHFAIIPT LQAPKSLSEP EQKLYDMVVK RFLAVFFPAA 

       430        440        450        460        470        480 
EFRVTTRITE VAGHHFKTEG KVLVEPGWLQ VYGRDAEGAD ANLVPVQKDE KVKTDEIAAV 

       490        500        510        520        530        540 
ALVTKPPARY SEATLLSAME GAGKLVEDDE LREAMAAKGL GTPATRAAII EGLLGEKYLV 

       550        560        570        580        590        600 
REGRELIPTA KAFQLMTLLR GLGVKELTAP ELTGEWEYKL SQMERGNLGR DAFMQEIARM 

       610        620        630        640        650        660 
TQQIVKRAKE YDSDTIPGDY ATLQTPCPNC GGQVKENYRR FACTKCEFSI SKIPGSRQFE 

       670        680        690        700        710        720 
IAEVEELLQQ KTIGPLSGFR SKMGRPFSAI LKLSFDDETK NYKLEFDFGQ DQGGEEGEAP 

       730        740        750        760        770        780 
DFSEQEPVGA CPKCNGRVFE HGMSYVCEHS VANPKTCDFR SGKVILQQEI TRDQMAKLLA 

       790        800        810        820        830        840 
DGRTDLMPNF KSSRTGRNFK AFLVKQPDGK IGFEFEKKEP KAAAAKKTAK SATKDAETVT 

       850        860 
EGADEKPAPA RKTAARKTTA RKTGS

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References

[1]"Complete sequence of chromosome 1 of Burkholderia cepacia AMMD."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-244 / AMMD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000440 Genomic DNA. Translation: ABI88741.1.
RefSeqYP_775075.1. NC_008390.1.

3D structure databases

ProteinModelPortalQ0BAT2.
ModBaseSearch...

Protein-protein interaction databases

STRING339670.Bamb_3185.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI88741; ABI88741; Bamb_3185.
GeneID4310461.
KEGGbam:Bamb_3185.
PATRIC19022156. VBIBurAmb61564_3338.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0550.
HOGENOMHOG000086847.
KOK03169.
OMAPGGRQFE.
ProtClustDBPRK08173.

Enzyme and pathway databases

BioCycBAMB339670:GH48-6639-MONOMER.

Family and domain databases

Gene3D1.10.290.10. 1 hit.
1.10.460.10. 2 hits.
InterProIPR000380. Topo_IA.
IPR003601. Topo_IA_2.
IPR023406. Topo_IA_AS.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013826. Topo_IA_cen_sub3.
IPR023405. Topo_IA_core_domain.
IPR003602. Topo_IA_DNA-bd.
IPR005738. TopoIII_bac.
IPR025589. Toprim_C_rpt.
IPR006171. Toprim_domain.
[Graphical view]
PANTHERPTHR11390. PTHR11390. 1 hit.
PfamPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
PF13342. Toprim_Crpt. 2 hits.
[Graphical view]
PRINTSPR00417. PRTPISMRASEI.
SMARTSM00437. TOP1Ac. 1 hit.
SM00436. TOP1Bc. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMSSF56712. Topo_IA_core. 1 hit.
TIGRFAMsTIGR01056. topB. 1 hit.
PROSITEPS00396. TOPOISOMERASE_I_PROK. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0BAT2_BURCM
AccessionPrimary (citable) accession number: Q0BAT2
Entry history
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info