Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

AMP-dependent synthetase and ligase

Gene

Bamb_4384

Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMB339670:GH48-4455-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
AMP-dependent synthetase and ligaseImported
Gene namesi
Ordered Locus Names:Bamb_4384Imported
OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))Imported
Taxonomic identifieri339670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000662 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi339670.Bamb_4384.

Structurei

3D structure databases

ProteinModelPortaliQ0B7D7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0365.
HOGENOMiHOG000229982.
KOiK01895.
OMAiVPGDYTR.
OrthoDBiEOG60GRR8.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0B7D7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVQAFLDAR DFLLRHRTDY ETAYRDFEWP VLDAFNWALD YFDPMARGND
60 70 80 90 100
QPALWIVDAA TGTGDPYSFA QMSERSSRIA NWLRGIGVVR GDRILLMLPN
110 120 130 140 150
RVELWDAMLA AMKLGAIVLP ATTQLSADDV RDRVQIGGAT YAIVDENETA
160 170 180 190 200
KFEQADLGLR RKIVAGAPRD GWLAMNDGYA ASDVFTPDAV TQSNETMLLY
210 220 230 240 250
FTSGTTSKPK LVEHTHRTYP VGHLSTMYWV GLQPGDIHWN ISSPGWAKHA
260 270 280 290 300
WSCFFAPWNA QACVFAFNYA RFEPKVVLDA LVKYRVTTLC APPTVWRMLV
310 320 330 340 350
QQPLASFDVK LREIVGAGEP LNPEIIERVK KAWGITIRDG YGQTETTCLI
360 370 380 390 400
GNTPGQPVVA GSMGRPLPGY RIALLDPDGA PVSEGEVALP IGAGASRPVG
410 420 430 440 450
LMNGYANNPD ATAHAMRDGH YRTSDIAMRG DDGYYVYIGR ADDVFKSSDY
460 470 480 490 500
RLSPFELESV LIEHPAIAEA AVVPSPDPVR LSVPKTYITL RQGYEESPAL
510 520 530 540 550
ALEIFRFSRE KLAPYKRIRR LQFAELPKTI SGKIRRVELR RREIERGDDA
560
TTRMPGEYWE EDFAAELK
Length:568
Mass (Da):63,449
Last modified:October 17, 2006 - v1
Checksum:i32DBC00ED34E19D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000441 Genomic DNA. Translation: ABI89936.1.
RefSeqiWP_011659365.1. NZ_CP009799.1.

Genome annotation databases

EnsemblBacteriaiABI89936; ABI89936; Bamb_4384.
KEGGibam:Bamb_4384.
PATRICi19024669. VBIBurAmb61564_4591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000441 Genomic DNA. Translation: ABI89936.1.
RefSeqiWP_011659365.1. NZ_CP009799.1.

3D structure databases

ProteinModelPortaliQ0B7D7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi339670.Bamb_4384.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI89936; ABI89936; Bamb_4384.
KEGGibam:Bamb_4384.
PATRICi19024669. VBIBurAmb61564_4591.

Phylogenomic databases

eggNOGiCOG0365.
HOGENOMiHOG000229982.
KOiK01895.
OMAiVPGDYTR.
OrthoDBiEOG60GRR8.

Enzyme and pathway databases

BioCyciBAMB339670:GH48-4455-MONOMER.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia cepacia AMMD."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-244 / AMMDImported.

Entry informationi

Entry nameiQ0B7D7_BURCM
AccessioniPrimary (citable) accession number: Q0B7D7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: July 22, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.