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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Bamb_5610

Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMB339670:GH48-5688-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Bamb_5610Imported
OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))Imported
Taxonomic identifieri339670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000662 Componenti: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi339670.Bamb_5610.

Structurei

3D structure databases

ProteinModelPortaliQ0B3W6.
SMRiQ0B3W6. Positions 642-929.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiYARKRDF.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0B3W6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGKLDPYRR KRHFGATPEP EGAHGHHAKA GAKPAARASA RGTHPLRFVI
60 70 80 90 100
QEHHARRLHY DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA
110 120 130 140 150
SFEGQIPEGH YGAGSVVVWD EGTWTPDGGV AQAREGYRAG KLTFRLDGEK
160 170 180 190 200
LHGGWALVRS GRQEGRQEQW LLIKERDDDA RSMDEFDVVG ERPGSVHDGA
210 220 230 240 250
ASARADAKNG SARGSRSGQR EKSGTSAARH DDHRHDGHAG TPIDPSRIEG
260 270 280 290 300
AVRAPLPEHV APQLATLVDG PPTQGDWCYE LKFDGYRILA RISGKGARRH
310 320 330 340 350
VKLMTREGRD WTAKLRAQRD ALAALDVDAA WLDGEAVVLG KNGLPDFQAL
360 370 380 390 400
QNAFGGGHSD EITLFVFDLP YLDGYDLRDA PLTARRALLE PLFADSDPTR
410 420 430 440 450
LRFSPDLGND VASLIASACD TGLEGLIGKR AESRYRAGRS PAWIKLKCRR
460 470 480 490 500
RQEFVIGGYT EPSGSRHGFG ALLLGVHEPA ADGKRRRGPG PLRYVGRVGT
510 520 530 540 550
GFDTRMLDRL TPILRKHERD TMPFDPPPRE RSRTPVHWIE PVLVAECEFA
560 570 580 590 600
EWTGDGIVRQ AAFIALREDK PAARIVREVP KHTETEVQME QRQTTRHERH
610 620 630 640 650
KPKGAARAER DTSDASDGKH PARSRGSRRA EADDTGPDQL GRVRISHPER
660 670 680 690 700
VIDSHSGTRK IDLARYWQWV APWLLRDLKG RPVSLVRAPG DISGELFFQK
710 720 730 740 750
HAERREIPFV TQHEGLDPGH GPLLSLDSVD ALLGAAQMGT IELHTWNAHA
760 770 780 790 800
SNIERPDRIV FDLDPDPALP WSAMIDAAQL VRGLLDELGL ISFCKTSGGK
810 820 830 840 850
GLHVVVPITR HMGWDEVKDF SRAVAQHVAG ALPDRFTATM GPKHRRGKIF
860 870 880 890 900
IDYLRNGRGA STIAAYSVRA RPGLGVSVPL RWDEVPDTTG GAQWTIDTLH
910 920 930
ERLDRLKRDP WDGYDDTRQR ITAQMRARLG TS
Length:932
Mass (Da):103,323
Last modified:October 17, 2006 - v1
Checksum:i44C23B80FB569626
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000442 Genomic DNA. Translation: ABI91157.1.
RefSeqiWP_011660516.1. NZ_CP009800.1.

Genome annotation databases

EnsemblBacteriaiABI91157; ABI91157; Bamb_5610.
KEGGibam:Bamb_5610.
PATRICi19027220. VBIBurAmb61564_5859.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000442 Genomic DNA. Translation: ABI91157.1.
RefSeqiWP_011660516.1. NZ_CP009800.1.

3D structure databases

ProteinModelPortaliQ0B3W6.
SMRiQ0B3W6. Positions 642-929.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi339670.Bamb_5610.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI91157; ABI91157; Bamb_5610.
KEGGibam:Bamb_5610.
PATRICi19027220. VBIBurAmb61564_5859.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiYARKRDF.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBAMB339670:GH48-5688-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 3 of Burkholderia cepacia AMMD."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-244 / AMMDImported.

Entry informationi

Entry nameiQ0B3W6_BURCM
AccessioniPrimary (citable) accession number: Q0B3W6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: July 22, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.