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Q0B3W6

- Q0B3W6_BURCM

UniProt

Q0B3W6 - Q0B3W6_BURCM

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Bamb_5610

Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (17 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBAMB339670:GH48-5688-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Bamb_5610Imported
    OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))Imported
    Taxonomic identifieri339670 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
    ProteomesiUP000000662: Chromosome 3

    Interactioni

    Protein-protein interaction databases

    STRINGi339670.Bamb_5610.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0B3W6.
    SMRiQ0B3W6. Positions 642-929.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0B3W6-1 [UniParc]FASTAAdd to Basket

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    MAGKLDPYRR KRHFGATPEP EGAHGHHAKA GAKPAARASA RGTHPLRFVI    50
    QEHHARRLHY DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA 100
    SFEGQIPEGH YGAGSVVVWD EGTWTPDGGV AQAREGYRAG KLTFRLDGEK 150
    LHGGWALVRS GRQEGRQEQW LLIKERDDDA RSMDEFDVVG ERPGSVHDGA 200
    ASARADAKNG SARGSRSGQR EKSGTSAARH DDHRHDGHAG TPIDPSRIEG 250
    AVRAPLPEHV APQLATLVDG PPTQGDWCYE LKFDGYRILA RISGKGARRH 300
    VKLMTREGRD WTAKLRAQRD ALAALDVDAA WLDGEAVVLG KNGLPDFQAL 350
    QNAFGGGHSD EITLFVFDLP YLDGYDLRDA PLTARRALLE PLFADSDPTR 400
    LRFSPDLGND VASLIASACD TGLEGLIGKR AESRYRAGRS PAWIKLKCRR 450
    RQEFVIGGYT EPSGSRHGFG ALLLGVHEPA ADGKRRRGPG PLRYVGRVGT 500
    GFDTRMLDRL TPILRKHERD TMPFDPPPRE RSRTPVHWIE PVLVAECEFA 550
    EWTGDGIVRQ AAFIALREDK PAARIVREVP KHTETEVQME QRQTTRHERH 600
    KPKGAARAER DTSDASDGKH PARSRGSRRA EADDTGPDQL GRVRISHPER 650
    VIDSHSGTRK IDLARYWQWV APWLLRDLKG RPVSLVRAPG DISGELFFQK 700
    HAERREIPFV TQHEGLDPGH GPLLSLDSVD ALLGAAQMGT IELHTWNAHA 750
    SNIERPDRIV FDLDPDPALP WSAMIDAAQL VRGLLDELGL ISFCKTSGGK 800
    GLHVVVPITR HMGWDEVKDF SRAVAQHVAG ALPDRFTATM GPKHRRGKIF 850
    IDYLRNGRGA STIAAYSVRA RPGLGVSVPL RWDEVPDTTG GAQWTIDTLH 900
    ERLDRLKRDP WDGYDDTRQR ITAQMRARLG TS 932
    Length:932
    Mass (Da):103,323
    Last modified:October 17, 2006 - v1
    Checksum:i44C23B80FB569626
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000442 Genomic DNA. Translation: ABI91157.1.
    RefSeqiYP_777491.1. NC_008392.1.

    Genome annotation databases

    EnsemblBacteriaiABI91157; ABI91157; Bamb_5610.
    GeneIDi4314605.
    KEGGibam:Bamb_5610.
    PATRICi19027220. VBIBurAmb61564_5859.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000442 Genomic DNA. Translation: ABI91157.1 .
    RefSeqi YP_777491.1. NC_008392.1.

    3D structure databases

    ProteinModelPortali Q0B3W6.
    SMRi Q0B3W6. Positions 642-929.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 339670.Bamb_5610.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI91157 ; ABI91157 ; Bamb_5610 .
    GeneIDi 4314605.
    KEGGi bam:Bamb_5610.
    PATRICi 19027220. VBIBurAmb61564_5859.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BAMB339670:GH48-5688-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 3 of Burkholderia cepacia AMMD."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
      , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
      Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-244 / AMMDImported.

    Entry informationi

    Entry nameiQ0B3W6_BURCM
    AccessioniPrimary (citable) accession number: Q0B3W6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 17, 2006
    Last sequence update: October 17, 2006
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3