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Q0B3W6 (Q0B3W6_BURCM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bamb_5610 EMBL ABI91157.1
OrganismBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) [Complete proteome] [HAMAP] EMBL ABI91157.1
Taxonomic identifier339670 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex

Protein attributes

Sequence length932 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q0B3W6 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: 44C23B80FB569626

FASTA932103,323
        10         20         30         40         50         60 
MAGKLDPYRR KRHFGATPEP EGAHGHHAKA GAKPAARASA RGTHPLRFVI QEHHARRLHY 

        70         80         90        100        110        120 
DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA SFEGQIPEGH YGAGSVVVWD 

       130        140        150        160        170        180 
EGTWTPDGGV AQAREGYRAG KLTFRLDGEK LHGGWALVRS GRQEGRQEQW LLIKERDDDA 

       190        200        210        220        230        240 
RSMDEFDVVG ERPGSVHDGA ASARADAKNG SARGSRSGQR EKSGTSAARH DDHRHDGHAG 

       250        260        270        280        290        300 
TPIDPSRIEG AVRAPLPEHV APQLATLVDG PPTQGDWCYE LKFDGYRILA RISGKGARRH 

       310        320        330        340        350        360 
VKLMTREGRD WTAKLRAQRD ALAALDVDAA WLDGEAVVLG KNGLPDFQAL QNAFGGGHSD 

       370        380        390        400        410        420 
EITLFVFDLP YLDGYDLRDA PLTARRALLE PLFADSDPTR LRFSPDLGND VASLIASACD 

       430        440        450        460        470        480 
TGLEGLIGKR AESRYRAGRS PAWIKLKCRR RQEFVIGGYT EPSGSRHGFG ALLLGVHEPA 

       490        500        510        520        530        540 
ADGKRRRGPG PLRYVGRVGT GFDTRMLDRL TPILRKHERD TMPFDPPPRE RSRTPVHWIE 

       550        560        570        580        590        600 
PVLVAECEFA EWTGDGIVRQ AAFIALREDK PAARIVREVP KHTETEVQME QRQTTRHERH 

       610        620        630        640        650        660 
KPKGAARAER DTSDASDGKH PARSRGSRRA EADDTGPDQL GRVRISHPER VIDSHSGTRK 

       670        680        690        700        710        720 
IDLARYWQWV APWLLRDLKG RPVSLVRAPG DISGELFFQK HAERREIPFV TQHEGLDPGH 

       730        740        750        760        770        780 
GPLLSLDSVD ALLGAAQMGT IELHTWNAHA SNIERPDRIV FDLDPDPALP WSAMIDAAQL 

       790        800        810        820        830        840 
VRGLLDELGL ISFCKTSGGK GLHVVVPITR HMGWDEVKDF SRAVAQHVAG ALPDRFTATM 

       850        860        870        880        890        900 
GPKHRRGKIF IDYLRNGRGA STIAAYSVRA RPGLGVSVPL RWDEVPDTTG GAQWTIDTLH 

       910        920        930 
ERLDRLKRDP WDGYDDTRQR ITAQMRARLG TS 

« Hide

References

[1]"Complete sequence of chromosome 3 of Burkholderia cepacia AMMD."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-244 / AMMD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000442 Genomic DNA. Translation: ABI91157.1.
RefSeqYP_777491.1. NC_008392.1.

3D structure databases

ProteinModelPortalQ0B3W6.
SMRQ0B3W6. Positions 642-929.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING339670.Bamb_5610.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI91157; ABI91157; Bamb_5610.
GeneID4314605.
KEGGbam:Bamb_5610.
PATRIC19027220. VBIBurAmb61564_5859.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.
OrthoDBEOG661H49.
ProtClustDBCLSK954720.

Enzyme and pathway databases

BioCycBAMB339670:GH48-5688-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0B3W6_BURCM
AccessionPrimary (citable) accession number: Q0B3W6
Entry history
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: April 16, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)