Q0B3W6 (Q0B3W6_BURCM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABI91157.1

Gene names

Ordered Locus Names:

Bamb_5610 EMBL ABI91157.1

Organism

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) [Complete proteome] [HAMAP] EMBL ABI91157.1

Taxonomic identifier

339670 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex › Burkholderia ambifaria

Protein attributes

Sequence length	932 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABI91157.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0B3W6 [UniParc]. Last modified October 17, 2006. Version 1. Checksum: 44C23B80FB569626	FASTA	932	103,323
	10 20 30 40 50 60 MAGKLDPYRR KRHFGATPEP EGAHGHHAKA GAKPAARASA RGTHPLRFVI QEHHARRLHY 70 80 90 100 110 120 DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA SFEGQIPEGH YGAGSVVVWD 130 140 150 160 170 180 EGTWTPDGGV AQAREGYRAG KLTFRLDGEK LHGGWALVRS GRQEGRQEQW LLIKERDDDA 190 200 210 220 230 240 RSMDEFDVVG ERPGSVHDGA ASARADAKNG SARGSRSGQR EKSGTSAARH DDHRHDGHAG 250 260 270 280 290 300 TPIDPSRIEG AVRAPLPEHV APQLATLVDG PPTQGDWCYE LKFDGYRILA RISGKGARRH 310 320 330 340 350 360 VKLMTREGRD WTAKLRAQRD ALAALDVDAA WLDGEAVVLG KNGLPDFQAL QNAFGGGHSD 370 380 390 400 410 420 EITLFVFDLP YLDGYDLRDA PLTARRALLE PLFADSDPTR LRFSPDLGND VASLIASACD 430 440 450 460 470 480 TGLEGLIGKR AESRYRAGRS PAWIKLKCRR RQEFVIGGYT EPSGSRHGFG ALLLGVHEPA 490 500 510 520 530 540 ADGKRRRGPG PLRYVGRVGT GFDTRMLDRL TPILRKHERD TMPFDPPPRE RSRTPVHWIE 550 560 570 580 590 600 PVLVAECEFA EWTGDGIVRQ AAFIALREDK PAARIVREVP KHTETEVQME QRQTTRHERH 610 620 630 640 650 660 KPKGAARAER DTSDASDGKH PARSRGSRRA EADDTGPDQL GRVRISHPER VIDSHSGTRK 670 680 690 700 710 720 IDLARYWQWV APWLLRDLKG RPVSLVRAPG DISGELFFQK HAERREIPFV TQHEGLDPGH 730 740 750 760 770 780 GPLLSLDSVD ALLGAAQMGT IELHTWNAHA SNIERPDRIV FDLDPDPALP WSAMIDAAQL 790 800 810 820 830 840 VRGLLDELGL ISFCKTSGGK GLHVVVPITR HMGWDEVKDF SRAVAQHVAG ALPDRFTATM 850 860 870 880 890 900 GPKHRRGKIF IDYLRNGRGA STIAAYSVRA RPGLGVSVPL RWDEVPDTTG GAQWTIDTLH 910 920 930 ERLDRLKRDP WDGYDDTRQR ITAQMRARLG TS

References

[1]

"Complete sequence of chromosome 3 of Burkholderia cepacia AMMD." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-244 / AMMD.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000442 Genomic DNA. Translation: ABI91157.1.
RefSeq	YP_777491.1. NC_008392.1.
3D structure databases
ProteinModelPortal	Q0B3W6.
SMR	Q0B3W6. Positions 642-929.
ModBase	Search...
Protein-protein interaction databases
STRING	339670.Bamb_5610.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI91157; ABI91157; Bamb_5610.
GeneID	4314605.
KEGG	bam:Bamb_5610.
PATRIC	19027220. VBIBurAmb61564_5859.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	CLSK954720.
Enzyme and pathway databases
BioCyc	BAMB339670:GH48-5688-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0B3W6_BURCM

Accession

Primary (citable) accession number: Q0B3W6

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	May 29, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)