SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q0B3W6

- Q0B3W6_BURCM

UniProt

Q0B3W6 - Q0B3W6_BURCM

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
Gene
Bamb_5610
Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMB339670:GH48-5688-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Bamb_5610Imported
OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))Imported
Taxonomic identifieri339670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000662: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi339670.Bamb_5610.

Structurei

3D structure databases

ProteinModelPortaliQ0B3W6.
SMRiQ0B3W6. Positions 642-929.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0B3W6-1 [UniParc]FASTAAdd to Basket

« Hide

MAGKLDPYRR KRHFGATPEP EGAHGHHAKA GAKPAARASA RGTHPLRFVI    50
QEHHARRLHY DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA 100
SFEGQIPEGH YGAGSVVVWD EGTWTPDGGV AQAREGYRAG KLTFRLDGEK 150
LHGGWALVRS GRQEGRQEQW LLIKERDDDA RSMDEFDVVG ERPGSVHDGA 200
ASARADAKNG SARGSRSGQR EKSGTSAARH DDHRHDGHAG TPIDPSRIEG 250
AVRAPLPEHV APQLATLVDG PPTQGDWCYE LKFDGYRILA RISGKGARRH 300
VKLMTREGRD WTAKLRAQRD ALAALDVDAA WLDGEAVVLG KNGLPDFQAL 350
QNAFGGGHSD EITLFVFDLP YLDGYDLRDA PLTARRALLE PLFADSDPTR 400
LRFSPDLGND VASLIASACD TGLEGLIGKR AESRYRAGRS PAWIKLKCRR 450
RQEFVIGGYT EPSGSRHGFG ALLLGVHEPA ADGKRRRGPG PLRYVGRVGT 500
GFDTRMLDRL TPILRKHERD TMPFDPPPRE RSRTPVHWIE PVLVAECEFA 550
EWTGDGIVRQ AAFIALREDK PAARIVREVP KHTETEVQME QRQTTRHERH 600
KPKGAARAER DTSDASDGKH PARSRGSRRA EADDTGPDQL GRVRISHPER 650
VIDSHSGTRK IDLARYWQWV APWLLRDLKG RPVSLVRAPG DISGELFFQK 700
HAERREIPFV TQHEGLDPGH GPLLSLDSVD ALLGAAQMGT IELHTWNAHA 750
SNIERPDRIV FDLDPDPALP WSAMIDAAQL VRGLLDELGL ISFCKTSGGK 800
GLHVVVPITR HMGWDEVKDF SRAVAQHVAG ALPDRFTATM GPKHRRGKIF 850
IDYLRNGRGA STIAAYSVRA RPGLGVSVPL RWDEVPDTTG GAQWTIDTLH 900
ERLDRLKRDP WDGYDDTRQR ITAQMRARLG TS 932
Length:932
Mass (Da):103,323
Last modified:October 17, 2006 - v1
Checksum:i44C23B80FB569626
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000442 Genomic DNA. Translation: ABI91157.1.
RefSeqiYP_777491.1. NC_008392.1.

Genome annotation databases

EnsemblBacteriaiABI91157; ABI91157; Bamb_5610.
GeneIDi4314605.
KEGGibam:Bamb_5610.
PATRICi19027220. VBIBurAmb61564_5859.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000442 Genomic DNA. Translation: ABI91157.1 .
RefSeqi YP_777491.1. NC_008392.1.

3D structure databases

ProteinModelPortali Q0B3W6.
SMRi Q0B3W6. Positions 642-929.
ModBasei Search...

Protein-protein interaction databases

STRINGi 339670.Bamb_5610.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI91157 ; ABI91157 ; Bamb_5610 .
GeneIDi 4314605.
KEGGi bam:Bamb_5610.
PATRICi 19027220. VBIBurAmb61564_5859.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BAMB339670:GH48-5688-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 3 of Burkholderia cepacia AMMD."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-244 / AMMD.

Entry informationi

Entry nameiQ0B3W6_BURCM
AccessioniPrimary (citable) accession number: Q0B3W6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: May 14, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi