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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Bamb_5871

Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciBAMB339670:GH48-5949-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Bamb_5871Imported
OrganismiBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))Imported
Taxonomic identifieri339670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
Proteomesi
  • UP000000662 Componenti: Chromosome 3

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi339670.Bamb_5871.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini151 – 313163Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000214462.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0B356-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRWKASIVDY EAQGKDIKDV LRDFGASQGI PTRIAADVSG TVSGKFHLPP
60 70 80 90 100
RRFLDTLASS FGFVWYYDGE VLDITTAAEL QSTLVKLDSA DTGALRDALD
110 120 130 140 150
RLRISDERFP IVYDSAQGTA LVSGPPRYVQ MVTNVASRLD NNAAHRSGTQ
160 170 180 190 200
VRVFPLFHAW AHDRTVPIDG RQVTLQGVVA VLNGIYHPHM AKAADKRGGE
210 220 230 240 250
GEGGRPAGGV KRNTPINDVN GNAYNGPYIP PPVPSGAAGK GMFAGLTGQP
260 270 280 290 300
SPAVAAAVGE PPPPQNTSTA PASDDQLPVI VADQRTNSVV IRDTADRMDQ
310 320 330 340 350
YGKLIDRLDV KPQLIEIEAH IIEIDDDALR QLGVDWTAHN SHIDVQTGTG
360 370 380 390 400
TLGQNTYNGT LSQNFGQTAL AGNVLAAATP VGASVAAVLG DAGRYLMARI
410 420 430 440 450
SALQETKAAK IDASPKVVTL NNIEAVMDNQ TQFFVPVSGY TSGDLYSVST
460 470 480 490 500
GISLRVLPMV VEEDGRTRIK LDVAIQDGQL TDRTVSNLPV IQNSTINTQA
510 520 530 540 550
FIEEGQALLI AGYRADSATM GVTGVPGLSK IPLIGALFRT DSRQKSHMER
560
LFLLSPRVIS P
Length:561
Mass (Da):59,892
Last modified:October 17, 2006 - v1
Checksum:iD1B740DACC2C16F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000442 Genomic DNA. Translation: ABI91417.1.

Genome annotation databases

EnsemblBacteriaiABI91417; ABI91417; Bamb_5871.
KEGGibam:Bamb_5871.
PATRICi19027782. VBIBurAmb61564_6140.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000442 Genomic DNA. Translation: ABI91417.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi339670.Bamb_5871.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI91417; ABI91417; Bamb_5871.
KEGGibam:Bamb_5871.
PATRICi19027782. VBIBurAmb61564_6140.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000214462.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Enzyme and pathway databases

BioCyciBAMB339670:GH48-5949-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ0B356_BURCM
AccessioniPrimary (citable) accession number: Q0B356
Entry historyi
Integrated into UniProtKB/TrEMBL: October 17, 2006
Last sequence update: October 17, 2006
Last modified: September 7, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.