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Protein

Ribosome-recycling factor

Gene

frr

Organism
Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.UniRule annotation

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein biosynthesis

Enzyme and pathway databases

BioCyciSWOL335541:GHL1-905-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome-recycling factorUniRule annotation
Short name:
RRFUniRule annotation
Alternative name(s):
Ribosome-releasing factorUniRule annotation
Gene namesi
Name:frrUniRule annotation
Ordered Locus Names:Swol_0885
OrganismiSyntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)
Taxonomic identifieri335541 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesSyntrophomonadaceaeSyntrophomonas
Proteomesi
  • UP000001968 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 185185Ribosome-recycling factorPRO_1000003301Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi335541.Swol_0885.

Structurei

3D structure databases

ProteinModelPortaliQ0AYK1.
SMRiQ0AYK1. Positions 1-185.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RRF family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108VCV. Bacteria.
COG0233. LUCA.
HOGENOMiHOG000040143.
KOiK02838.
OMAiMLSVQVW.
OrthoDBiPOG091H0220.

Family and domain databases

CDDicd00520. RRF. 1 hit.
Gene3Di1.10.132.20. 1 hit.
HAMAPiMF_00040. RRF. 1 hit.
InterProiIPR002661. Ribosome_recyc_fac.
IPR023584. Ribosome_recyc_fac_dom.
[Graphical view]
PANTHERiPTHR20982. PTHR20982. 1 hit.
PfamiPF01765. RRF. 1 hit.
[Graphical view]
SUPFAMiSSF55194. SSF55194. 1 hit.
TIGRFAMsiTIGR00496. frr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0AYK1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKDILSDTE ERMKKTIEHL RKDLASLRAG RANPAMLEKI MVDYYGQPTP
60 70 80 90 100
INQLANITVP EARLLVIQPW DKTIIASIEK AIMKSDLGIN PSNDGNVIRL
110 120 130 140 150
VIPQLTEERR KELVKVLRKR AEEARVAVRN IRRDSNELLK SGEKEKLISE
160 170 180
DDNKKGMDDI QKETDRHIKE IDSILQGKEK EIMEV
Length:185
Mass (Da):21,263
Last modified:October 17, 2006 - v1
Checksum:iBAF95FC6CF85087C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000448 Genomic DNA. Translation: ABI68203.1.
RefSeqiWP_011640308.1. NC_008346.1.

Genome annotation databases

EnsemblBacteriaiABI68203; ABI68203; Swol_0885.
KEGGiswo:Swol_0885.
PATRICi23856533. VBISynWol51738_0934.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000448 Genomic DNA. Translation: ABI68203.1.
RefSeqiWP_011640308.1. NC_008346.1.

3D structure databases

ProteinModelPortaliQ0AYK1.
SMRiQ0AYK1. Positions 1-185.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi335541.Swol_0885.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI68203; ABI68203; Swol_0885.
KEGGiswo:Swol_0885.
PATRICi23856533. VBISynWol51738_0934.

Phylogenomic databases

eggNOGiENOG4108VCV. Bacteria.
COG0233. LUCA.
HOGENOMiHOG000040143.
KOiK02838.
OMAiMLSVQVW.
OrthoDBiPOG091H0220.

Enzyme and pathway databases

BioCyciSWOL335541:GHL1-905-MONOMER.

Family and domain databases

CDDicd00520. RRF. 1 hit.
Gene3Di1.10.132.20. 1 hit.
HAMAPiMF_00040. RRF. 1 hit.
InterProiIPR002661. Ribosome_recyc_fac.
IPR023584. Ribosome_recyc_fac_dom.
[Graphical view]
PANTHERiPTHR20982. PTHR20982. 1 hit.
PfamiPF01765. RRF. 1 hit.
[Graphical view]
SUPFAMiSSF55194. SSF55194. 1 hit.
TIGRFAMsiTIGR00496. frr. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRRF_SYNWW
AccessioniPrimary (citable) accession number: Q0AYK1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 17, 2006
Last modified: September 7, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.