Q0AXX1 (Q0AXX1_SYNWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, putative EMBL ABI68433.1

Gene names

Ordered Locus Names:

Swol_1123

Organism

Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) [Complete proteome] [HAMAP] EMBL ABI68433.1

Taxonomic identifier

335541 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Syntrophomonadaceae › Syntrophomonas › Syntrophomonas wolfei › Syntrophomonas wolfei subsp. wolfei

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABI68433.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0AXX1 [UniParc]. Last modified October 17, 2006. Version 1. Checksum: 5476FCB358EE3216	FASTA	309	34,890
	10 20 30 40 50 60 MEIFLREIRS MDPINCEQAF DSDDFLYQVK WDGVRMLVAV AGEQVSLLNK RGNLRSRQYP 70 80 90 100 110 120 ELQNLPNLIR ASTAVLDGEI VVLREGKPSF PAVMQRDNCR NPMKIQHLSK TLAISYMVFD 130 140 150 160 170 180 LLYLNGRDLR SASLVDRLSQ LAELFDNQGC LYLVESFSQG TILFDSVQRA GLEGIVAKKK 190 200 210 220 230 240 NSFYRPGKQH DDWFKIKCRC SQACLVGGYT LRGKQVNALL LGVMRDGSLS FAGKASNGLD 250 260 270 280 290 300 AEQLQILSET LPRLEVKDSP FLEPTPAGSH YITPQLAVEV EYLEWTDSLH LRFPVIKSFI KNTEADYSV

References

[1]

"The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production." Sieber J.R., Sims D.R., Han C., Kim E., Lykidis A., Lapidus A.L., McDonnald E., Rohlin L., Culley D.E., Gunsalus R., McInerney M.J. Environ. Microbiol. 12:2289-2301(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Goettingen.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000448 Genomic DNA. Translation: ABI68433.1.
RefSeq	YP_753804.1. NC_008346.1.
3D structure databases
ProteinModelPortal	Q0AXX1.
ModBase	Search...
Protein-protein interaction databases
STRING	335541.Swol_1123.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI68433; ABI68433; Swol_1123.
GeneID	4282959.
KEGG	swo:Swol_1123.
PATRIC	23857061. VBISynWol51738_1192.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	EVEYLEW.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0AXX1_SYNWW

Accession

Primary (citable) accession number: Q0AXX1

Entry history

Integrated into UniProtKB/TrEMBL:	October 17, 2006
Last sequence update:	October 17, 2006
Last modified:	May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)