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Q0AXX1

- Q0AXX1_SYNWW

UniProt

Q0AXX1 - Q0AXX1_SYNWW

Protein
Submitted name:

DNA ligase, putative

Gene

Swol_1123

Organism
Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (17 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSWOL335541:GHL1-1154-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, putativeImported
    Gene namesi
    Ordered Locus Names:Swol_1123Imported
    OrganismiSyntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)Imported
    Taxonomic identifieri335541 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesSyntrophomonadaceaeSyntrophomonas
    ProteomesiUP000001968: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi335541.Swol_1123.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0AXX1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiVEVKYGQ.
    OrthoDBiEOG6BW4VZ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0AXX1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEIFLREIRS MDPINCEQAF DSDDFLYQVK WDGVRMLVAV AGEQVSLLNK    50
    RGNLRSRQYP ELQNLPNLIR ASTAVLDGEI VVLREGKPSF PAVMQRDNCR 100
    NPMKIQHLSK TLAISYMVFD LLYLNGRDLR SASLVDRLSQ LAELFDNQGC 150
    LYLVESFSQG TILFDSVQRA GLEGIVAKKK NSFYRPGKQH DDWFKIKCRC 200
    SQACLVGGYT LRGKQVNALL LGVMRDGSLS FAGKASNGLD AEQLQILSET 250
    LPRLEVKDSP FLEPTPAGSH YITPQLAVEV EYLEWTDSLH LRFPVIKSFI 300
    KNTEADYSV 309
    Length:309
    Mass (Da):34,890
    Last modified:October 17, 2006 - v1
    Checksum:i5476FCB358EE3216
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000448 Genomic DNA. Translation: ABI68433.1.
    RefSeqiYP_753804.1. NC_008346.1.

    Genome annotation databases

    EnsemblBacteriaiABI68433; ABI68433; Swol_1123.
    GeneIDi4282959.
    KEGGiswo:Swol_1123.
    PATRICi23857061. VBISynWol51738_1192.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000448 Genomic DNA. Translation: ABI68433.1 .
    RefSeqi YP_753804.1. NC_008346.1.

    3D structure databases

    ProteinModelPortali Q0AXX1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 335541.Swol_1123.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI68433 ; ABI68433 ; Swol_1123 .
    GeneIDi 4282959.
    KEGGi swo:Swol_1123.
    PATRICi 23857061. VBISynWol51738_1192.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi VEVKYGQ.
    OrthoDBi EOG6BW4VZ.

    Enzyme and pathway databases

    BioCyci SWOL335541:GHL1-1154-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production."
      Sieber J.R., Sims D.R., Han C., Kim E., Lykidis A., Lapidus A.L., McDonnald E., Rohlin L., Culley D.E., Gunsalus R., McInerney M.J.
      Environ. Microbiol. 12:2289-2301(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 2245B / GoettingenImported.

    Entry informationi

    Entry nameiQ0AXX1_SYNWW
    AccessioniPrimary (citable) accession number: Q0AXX1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 17, 2006
    Last sequence update: October 17, 2006
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3