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Q0ATA0 (TYPH_MARMM) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:Mmar10_0191
OrganismMaricaulis maris (strain MCS10) [Complete proteome] [HAMAP]
Taxonomic identifier394221 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesHyphomonadaceaeMaricaulis

Protein attributes

Sequence length519 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 519519Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314701

Sequences

Sequence LengthMass (Da)Tools
Q0ATA0 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: EFA638F8D029E71B

FASTA51955,091
        10         20         30         40         50         60 
MTKMIDISAM PAELSEKNTL TARRLGIDTH EHAVIYMRAD CHICRAEGFN NHARIKVSGP 

        70         80         90        100        110        120 
SNKAIIATLN LVVTDLLSPG QIGLSETAWL RLQLNEGDPV RLIHPAPLLS LSAVRAKIFG 

       130        140        150        160        170        180 
EPLDQNNLDA IVGDIAAGRF SDIHLSAFLT ASAAHEQSFE EIRDLTLSMV NVGQRLDWGR 

       190        200        210        220        230        240 
APIVDKHCVG GLPGNRTTPI VVAICVAAGL TMPKTSSRAI TSPAGTADTM ETLAPVELDV 

       250        260        270        280        290        300 
SAMRRVVETV GGCIVWGGAV ALSPVDDTLI RIERALDIDS DGQLVASVLS KKIAAGATHL 

       310        320        330        340        350        360 
VIDMPVGPTA KVRTEEAAAR LEGLFARVGS NLGLNLKIMR TDGSQPVGRG IGPALEAWDV 

       370        380        390        400        410        420 
LAVLNNEGHN VPDLTVQATL LAGELLEMGQ AAPAGRGAEL ATELLVNGRA WRAFEAICEA 

       430        440        450        460        470        480 
QGGFREPPTA PHYQVIQSPR DGVVGRIDNR RLAKAAKLAG APASKAAGIV LHAKLGSQMV 

       490        500        510 
KGQPLYSLHS QSLGELSYAH DYLASQPEII EIEEEQCPR 

« Hide

References

[1]"Complete sequence of Maricaulis maris MCS10."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Viollier P., Stephens C., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MCS10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000449 Genomic DNA. Translation: ABI64487.1.
RefSeqYP_755425.1. NC_008347.1.

3D structure databases

ProteinModelPortalQ0ATA0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394221.Mmar10_0191.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI64487; ABI64487; Mmar10_0191.
GeneID4284181.
KEGGmmr:Mmar10_0191.
PATRIC22448360. VBIMarMar77530_0190.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMACHSEGFE.
OrthoDBEOG61ZTGG.
ProtClustDBPRK04350.

Enzyme and pathway databases

BioCycMMAR394221:GHNB-197-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_MARMM
AccessionPrimary (citable) accession number: Q0ATA0
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 17, 2006
Last modified: February 19, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families