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Q0ABG9

- RS3_ALKEH

UniProt

Q0ABG9 - RS3_ALKEH

Protein

30S ribosomal protein S3

Gene

rpsC

Organism
Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (17 Oct 2006)
      Previous versions | rss
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    Functioni

    Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.UniRule annotation

    GO - Molecular functioni

    1. mRNA binding Source: UniProtKB-HAMAP
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciAEHR187272:GHAX-481-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S3UniRule annotation
    Gene namesi
    Name:rpsCUniRule annotation
    Ordered Locus Names:Mlg_0464
    OrganismiAlkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
    Taxonomic identifieri187272 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeAlkalilimnicola
    ProteomesiUP000001962: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 22622630S ribosomal protein S3PRO_0000293747Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.UniRule annotation

    Protein-protein interaction databases

    STRINGi187272.Mlg_0464.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0ABG9.
    SMRiQ0ABG9. Positions 2-207.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini39 – 10769KH type-2UniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S3P family.UniRule annotation
    Contains 1 KH type-2 domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0092.
    HOGENOMiHOG000210610.
    KOiK02982.
    OrthoDBiEOG6K13X3.

    Family and domain databases

    Gene3Di3.30.1140.32. 1 hit.
    3.30.300.20. 1 hit.
    HAMAPiMF_01309_B. Ribosomal_S3_B.
    InterProiIPR004087. KH_dom.
    IPR015946. KH_dom-like_a/b.
    IPR004044. KH_dom_type_2.
    IPR009019. KH_prok-type.
    IPR005704. Ribosomal_S3_bac.
    IPR001351. Ribosomal_S3_C.
    IPR018280. Ribosomal_S3_CS.
    [Graphical view]
    PfamiPF07650. KH_2. 1 hit.
    PF00189. Ribosomal_S3_C. 1 hit.
    [Graphical view]
    SMARTiSM00322. KH. 1 hit.
    [Graphical view]
    SUPFAMiSSF54814. SSF54814. 1 hit.
    SSF54821. SSF54821. 1 hit.
    TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
    PROSITEiPS50823. KH_TYPE_2. 1 hit.
    PS00548. RIBOSOMAL_S3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0ABG9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGHKVHPTGF RLGVTEDWRS MWYAGSSNFG EYLNTDLQVR NFIRKKLAHA    50
    SVSRIRIERP AKNALVTIHT ARPGIVIGKK GEDIDRLRGE VARLMGVPVH 100
    INIEEIRKPE LDAKLVAESV AQQLERRIMF RRAMKRAVGN AMRLGAQGIK 150
    VHVSGRLNGA EIARSEWYRE GRVPLHTLRA NIDYGVAEAH TTYGVIGVKV 200
    WVFKGEIIDS DAQPAAGGEG ARQGKG 226
    Length:226
    Mass (Da):25,106
    Last modified:October 17, 2006 - v1
    Checksum:i5BBCB4042F7B8862
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000453 Genomic DNA. Translation: ABI55818.1.
    RefSeqiYP_741308.1. NC_008340.1.

    Genome annotation databases

    EnsemblBacteriaiABI55818; ABI55818; Mlg_0464.
    GeneIDi4270398.
    KEGGiaeh:Mlg_0464.
    PATRICi20860114. VBIAlkEhr114327_0454.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000453 Genomic DNA. Translation: ABI55818.1 .
    RefSeqi YP_741308.1. NC_008340.1.

    3D structure databases

    ProteinModelPortali Q0ABG9.
    SMRi Q0ABG9. Positions 2-207.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 187272.Mlg_0464.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI55818 ; ABI55818 ; Mlg_0464 .
    GeneIDi 4270398.
    KEGGi aeh:Mlg_0464.
    PATRICi 20860114. VBIAlkEhr114327_0454.

    Phylogenomic databases

    eggNOGi COG0092.
    HOGENOMi HOG000210610.
    KOi K02982.
    OrthoDBi EOG6K13X3.

    Enzyme and pathway databases

    BioCyci AEHR187272:GHAX-481-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1140.32. 1 hit.
    3.30.300.20. 1 hit.
    HAMAPi MF_01309_B. Ribosomal_S3_B.
    InterProi IPR004087. KH_dom.
    IPR015946. KH_dom-like_a/b.
    IPR004044. KH_dom_type_2.
    IPR009019. KH_prok-type.
    IPR005704. Ribosomal_S3_bac.
    IPR001351. Ribosomal_S3_C.
    IPR018280. Ribosomal_S3_CS.
    [Graphical view ]
    Pfami PF07650. KH_2. 1 hit.
    PF00189. Ribosomal_S3_C. 1 hit.
    [Graphical view ]
    SMARTi SM00322. KH. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54814. SSF54814. 1 hit.
    SSF54821. SSF54821. 1 hit.
    TIGRFAMsi TIGR01009. rpsC_bact. 1 hit.
    PROSITEi PS50823. KH_TYPE_2. 1 hit.
    PS00548. RIBOSOMAL_S3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-1101 / DSM 17681 / MLHE-1.

    Entry informationi

    Entry nameiRS3_ALKEH
    AccessioniPrimary (citable) accession number: Q0ABG9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: October 17, 2006
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3