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Q0ABG9 (RS3_ALHEH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S3
Gene names
Name:rpsC
Ordered Locus Names:Mlg_0464
OrganismAlkalilimnicola ehrlichei (strain MLHE-1) [Complete proteome] [HAMAP]
Taxonomic identifier187272 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Ectothiorhodospiraceae › Alkalilimnicola ›

Protein attributes

Sequence length226 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation By similarity. HAMAP-Rule MF_01309

Subunit structure

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14 By similarity.

Sequence similarities

Belongs to the ribosomal protein S3P family.

Contains 1 KH type-2 domain.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentsmall ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmRNA binding

Inferred from electronic annotation. Source: HAMAP

rRNA binding

Inferred from electronic annotation. Source: HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 22622630S ribosomal protein S3 HAMAP-Rule MF_01309
PRO_0000293747

Regions

Domain39 – 10769KH type-2

Sequences

Sequence LengthMass (Da)Tools
Q0ABG9 [UniParc].

Last modified October 17, 2006. Version 1.
Checksum: 5BBCB4042F7B8862

FASTA22625,106
        10         20         30         40         50         60 
MGHKVHPTGF RLGVTEDWRS MWYAGSSNFG EYLNTDLQVR NFIRKKLAHA SVSRIRIERP 

        70         80         90        100        110        120 
AKNALVTIHT ARPGIVIGKK GEDIDRLRGE VARLMGVPVH INIEEIRKPE LDAKLVAESV 

       130        140        150        160        170        180 
AQQLERRIMF RRAMKRAVGN AMRLGAQGIK VHVSGRLNGA EIARSEWYRE GRVPLHTLRA 

       190        200        210        220 
NIDYGVAEAH TTYGVIGVKV WVFKGEIIDS DAQPAAGGEG ARQGKG

« Hide

References

[1]"Complete sequence of Alkalilimnicola ehrilichei MLHE-1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Oremland R.S., Hoeft S.E., Switzer-Blum J., Kulp T., King G., Tabita R., Witte B., Santini J.M., Basu P., Hollibaugh J.T., Xie G., Stolz J.F., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MLHE-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000453 Genomic DNA. Translation: ABI55818.1.
RefSeqYP_741308.1. NC_008340.1.

3D structure databases

ProteinModelPortalQ0ABG9.
SMRQ0ABG9. Positions 2-207.
ModBaseSearch...

Protein-protein interaction databases

STRING187272.Mlg_0464.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI55818; ABI55818; Mlg_0464.
GeneID4270398.
KEGGaeh:Mlg_0464.
PATRIC20860114. VBIAlkEhr114327_0454.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0092.
HOGENOMHOG000210610.
KOK02982.
OMAMGQKTNP.
ProtClustDBPRK00310.

Enzyme and pathway databases

BioCycAEHR187272:GHAX-520-MONOMER.

Family and domain databases

Gene3D3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPMF_01309_B. Ribosomal_S3_B.
InterProIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTSM00322. KH. 1 hit.
[Graphical view]
SUPFAMSSF54814. KH_prok. 1 hit.
SSF54821. Ribosomal_S3_C. 1 hit.
TIGRFAMsTIGR01009. rpsC_bact. 1 hit.
PROSITEPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS3_ALHEH
AccessionPrimary (citable) accession number: Q0ABG9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 17, 2006
Last modified: May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

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