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Q0ABG9

- RS3_ALKEH

UniProt

Q0ABG9 - RS3_ALKEH

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Protein

30S ribosomal protein S3

Gene

rpsC

Organism
Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.UniRule annotation

GO - Molecular functioni

  1. mRNA binding Source: UniProtKB-HAMAP
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciAEHR187272:GHAX-481-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S3UniRule annotation
Gene namesi
Name:rpsCUniRule annotation
Ordered Locus Names:Mlg_0464
OrganismiAlkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
Taxonomic identifieri187272 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeAlkalilimnicola
ProteomesiUP000001962: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 22622630S ribosomal protein S3PRO_0000293747Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.UniRule annotation

Protein-protein interaction databases

STRINGi187272.Mlg_0464.

Structurei

3D structure databases

ProteinModelPortaliQ0ABG9.
SMRiQ0ABG9. Positions 2-207.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 10769KH type-2UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S3P family.UniRule annotation
Contains 1 KH type-2 domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0092.
HOGENOMiHOG000210610.
KOiK02982.
OrthoDBiEOG6K13X3.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPiMF_01309_B. Ribosomal_S3_B.
InterProiIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0ABG9 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGHKVHPTGF RLGVTEDWRS MWYAGSSNFG EYLNTDLQVR NFIRKKLAHA
60 70 80 90 100
SVSRIRIERP AKNALVTIHT ARPGIVIGKK GEDIDRLRGE VARLMGVPVH
110 120 130 140 150
INIEEIRKPE LDAKLVAESV AQQLERRIMF RRAMKRAVGN AMRLGAQGIK
160 170 180 190 200
VHVSGRLNGA EIARSEWYRE GRVPLHTLRA NIDYGVAEAH TTYGVIGVKV
210 220
WVFKGEIIDS DAQPAAGGEG ARQGKG
Length:226
Mass (Da):25,106
Last modified:October 17, 2006 - v1
Checksum:i5BBCB4042F7B8862
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000453 Genomic DNA. Translation: ABI55818.1.
RefSeqiYP_741308.1. NC_008340.1.

Genome annotation databases

EnsemblBacteriaiABI55818; ABI55818; Mlg_0464.
GeneIDi4270398.
KEGGiaeh:Mlg_0464.
PATRICi20860114. VBIAlkEhr114327_0454.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000453 Genomic DNA. Translation: ABI55818.1 .
RefSeqi YP_741308.1. NC_008340.1.

3D structure databases

ProteinModelPortali Q0ABG9.
SMRi Q0ABG9. Positions 2-207.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 187272.Mlg_0464.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI55818 ; ABI55818 ; Mlg_0464 .
GeneIDi 4270398.
KEGGi aeh:Mlg_0464.
PATRICi 20860114. VBIAlkEhr114327_0454.

Phylogenomic databases

eggNOGi COG0092.
HOGENOMi HOG000210610.
KOi K02982.
OrthoDBi EOG6K13X3.

Enzyme and pathway databases

BioCyci AEHR187272:GHAX-481-MONOMER.

Family and domain databases

Gene3Di 3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPi MF_01309_B. Ribosomal_S3_B.
InterProi IPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view ]
Pfami PF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view ]
SMARTi SM00322. KH. 1 hit.
[Graphical view ]
SUPFAMi SSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsi TIGR01009. rpsC_bact. 1 hit.
PROSITEi PS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1101 / DSM 17681 / MLHE-1.

Entry informationi

Entry nameiRS3_ALKEH
AccessioniPrimary (citable) accession number: Q0ABG9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 17, 2006
Last modified: October 1, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3