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Q09E36 (Q09E36_STIAD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

DNA ligase D EMBL EAU70093.1
Gene names
Name:ligD EMBL EAU70093.1
Ordered Locus Names:STAUR_6997 EMBL ADO74753.1
ORF Names:STIAU_8411 EMBL EAU70093.1
OrganismStigmatella aurantiaca (strain DW4/3-1) [Complete proteome] [HAMAP] EMBL EAU70093.1
Taxonomic identifier378806 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella

Protein attributes

Sequence length836 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q09E36 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: FD4FE49892184E37

FASTA83693,061
        10         20         30         40         50         60 
MKTPRSLRTY RAKRDFQKTS EPAPEAKAPR RRGAPPLFVV HKHDATRLHY DLRLEIDGAL 

        70         80         90        100        110        120 
ASWALPKGPS FDPKTKRLAV ETEDHPLAYA GFEGRIPEGE YGGGDSLLWD RGTYETVPPG 

       130        140        150        160        170        180 
EAPEQRKKGH LTVQLHGEKL KGRWHLIRTK SRGKKAQWLC FKAMDGEADA DYDVTADRPE 

       190        200        210        220        230        240 
SVKSGRSATR GPVRKGALKS RPLPAEQLLE RVWPPMLAQL SVPTEADDAT HLYEVKYDGF 

       250        260        270        280        290        300 
RALAALSSGA LTLHSRNGHD LSGRFPQLAE ALRQLRVTEA VLDGEIIALD PQGRSRFQLL 

       310        320        330        340        350        360 
QKGSDAEQRF VAFDLLWLDG EDLRPRPLEA RRELLEQLLS GVKPPLQLSE RLDLPGDEAL 

       370        380        390        400        410        420 
AKARSQGWEG LIAKRRGAPY VGSRSRDWLK LKVQAAQETV ILGYLPIQNA RAREEIGALL 

       430        440        450        460        470        480 
VGVHGPDGYH DVGKVGTGFS SETRRELRAL LDRQRVRAPV AVDAKPRPGA VWVKPKYVAQ 

       490        500        510        520        530        540 
VHFTEWTHDG RLRHPVFQGL RTDKKPQEVV REQVSEPRKA AQKSKAAPKS GARRAPRAFS 

       550        560        570        580        590        600 
ARATRSQVQE EPAEAEGRAR LTHGDRVLYP QERLTKQDVF AYYREAAPLL LPVLANRPLA 

       610        620        630        640        650        660 
VQQWPAGIQA PGFFRHELSG MPAWLPTLRV KHEAKTLAHV NVQSLEALLW LANQSALTLH 

       670        680        690        700        710        720 
IWSSHAPKLA QPDWVVFDLD PGKGPWEDVI TVAQALREKL EALGLESLPK TSGKRGLHVL 

       730        740        750        760        770        780 
IPLAPGHTYA QTQRFAEKIA AELETELGSL ATTERTIQKR RGRLYLDVGQ NGRGKTVVAP 

       790        800        810        820        830 
YSLRAIPGAP FSAPLAWSEV TRKLDPLRFT LKTLSKRLDA VGDLFARALH GTQTLP 

« Hide

References

« Hide 'large scale' references
[1]Nierman W.C.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DW4/3-1 EMBL EAU70093.1.
[2]"Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DW4/3-1.
[3]"Comparative genomic analysis of fruiting body formation in Myxococcales."
Huntley S., Hamann N., Wegener-Feldbrugge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Muller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
Mol. Biol. Evol. 28:1083-1097(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DW4/3-1 EMBL ADO74753.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002271 Genomic DNA. Translation: ADO74753.1.
AAMD01000001 Genomic DNA. Translation: EAU70093.1.
RefSeqYP_003956580.1. NC_014623.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO74753; ADO74753; STAUR_6997.
EAU70093; EAU70093; STIAU_8411.
GeneID9880490.
KEGGsur:STAUR_6997.
PATRIC38547974. VBIStiAur43712_0109.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSAUR378806:GCZI-6997-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ09E36_STIAD
AccessionPrimary (citable) accession number: Q09E36
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: April 16, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)