Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP dependent DNA ligase

Gene

ligD

Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciSAUR378806:G1GOG-6995-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:STAUR_6997Imported
ORF Names:STIAU_8411Imported
OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
Taxonomic identifieri378806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeArchangiaceaeStigmatella
Proteomesi
  • UP000032702 Componenti: Unassembled WGS sequence
  • UP000001351 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi378806.STAUR_6997

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini301 – 436DNA_LIGASE_A3InterPro annotationAdd BLAST136

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
KOiK01971
OMAiAMMVEDH
OrthoDBiPOG091H0AZ9

Family and domain databases

InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

Q09E36-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTPRSLRTY RAKRDFQKTS EPAPEAKAPR RRGAPPLFVV HKHDATRLHY
60 70 80 90 100
DLRLEIDGAL ASWALPKGPS FDPKTKRLAV ETEDHPLAYA GFEGRIPEGE
110 120 130 140 150
YGGGDSLLWD RGTYETVPPG EAPEQRKKGH LTVQLHGEKL KGRWHLIRTK
160 170 180 190 200
SRGKKAQWLC FKAMDGEADA DYDVTADRPE SVKSGRSATR GPVRKGALKS
210 220 230 240 250
RPLPAEQLLE RVWPPMLAQL SVPTEADDAT HLYEVKYDGF RALAALSSGA
260 270 280 290 300
LTLHSRNGHD LSGRFPQLAE ALRQLRVTEA VLDGEIIALD PQGRSRFQLL
310 320 330 340 350
QKGSDAEQRF VAFDLLWLDG EDLRPRPLEA RRELLEQLLS GVKPPLQLSE
360 370 380 390 400
RLDLPGDEAL AKARSQGWEG LIAKRRGAPY VGSRSRDWLK LKVQAAQETV
410 420 430 440 450
ILGYLPIQNA RAREEIGALL VGVHGPDGYH DVGKVGTGFS SETRRELRAL
460 470 480 490 500
LDRQRVRAPV AVDAKPRPGA VWVKPKYVAQ VHFTEWTHDG RLRHPVFQGL
510 520 530 540 550
RTDKKPQEVV REQVSEPRKA AQKSKAAPKS GARRAPRAFS ARATRSQVQE
560 570 580 590 600
EPAEAEGRAR LTHGDRVLYP QERLTKQDVF AYYREAAPLL LPVLANRPLA
610 620 630 640 650
VQQWPAGIQA PGFFRHELSG MPAWLPTLRV KHEAKTLAHV NVQSLEALLW
660 670 680 690 700
LANQSALTLH IWSSHAPKLA QPDWVVFDLD PGKGPWEDVI TVAQALREKL
710 720 730 740 750
EALGLESLPK TSGKRGLHVL IPLAPGHTYA QTQRFAEKIA AELETELGSL
760 770 780 790 800
ATTERTIQKR RGRLYLDVGQ NGRGKTVVAP YSLRAIPGAP FSAPLAWSEV
810 820 830
TRKLDPLRFT LKTLSKRLDA VGDLFARALH GTQTLP
Length:836
Mass (Da):93,061
Last modified:October 31, 2006 - v1
Checksum:iFD4FE49892184E37
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002271 Genomic DNA Translation: ADO74753.1
AAMD01000001 Genomic DNA Translation: EAU70093.1
RefSeqiWP_002609400.1, NZ_AAMD01000001.1

Genome annotation databases

EnsemblBacteriaiADO74753; ADO74753; STAUR_6997
EAU70093; EAU70093; STIAU_8411
KEGGisur:STAUR_6997
PATRICifig|378806.16.peg.9547

Similar proteinsi

Entry informationi

Entry nameiQ09E36_STIAD
AccessioniPrimary (citable) accession number: Q09E36
Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: February 28, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported