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Q09E36

- Q09E36_STIAD

UniProt

Q09E36 - Q09E36_STIAD

Protein
Submitted name:

ATP dependent DNA ligase

Gene

ligD

Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSAUR378806:GCZI-6997-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:STAUR_6997Imported
    ORF Names:STIAU_8411Imported
    OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
    Taxonomic identifieri378806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella
    ProteomesiUP000001351: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliQ09E36.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q09E36-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTPRSLRTY RAKRDFQKTS EPAPEAKAPR RRGAPPLFVV HKHDATRLHY    50
    DLRLEIDGAL ASWALPKGPS FDPKTKRLAV ETEDHPLAYA GFEGRIPEGE 100
    YGGGDSLLWD RGTYETVPPG EAPEQRKKGH LTVQLHGEKL KGRWHLIRTK 150
    SRGKKAQWLC FKAMDGEADA DYDVTADRPE SVKSGRSATR GPVRKGALKS 200
    RPLPAEQLLE RVWPPMLAQL SVPTEADDAT HLYEVKYDGF RALAALSSGA 250
    LTLHSRNGHD LSGRFPQLAE ALRQLRVTEA VLDGEIIALD PQGRSRFQLL 300
    QKGSDAEQRF VAFDLLWLDG EDLRPRPLEA RRELLEQLLS GVKPPLQLSE 350
    RLDLPGDEAL AKARSQGWEG LIAKRRGAPY VGSRSRDWLK LKVQAAQETV 400
    ILGYLPIQNA RAREEIGALL VGVHGPDGYH DVGKVGTGFS SETRRELRAL 450
    LDRQRVRAPV AVDAKPRPGA VWVKPKYVAQ VHFTEWTHDG RLRHPVFQGL 500
    RTDKKPQEVV REQVSEPRKA AQKSKAAPKS GARRAPRAFS ARATRSQVQE 550
    EPAEAEGRAR LTHGDRVLYP QERLTKQDVF AYYREAAPLL LPVLANRPLA 600
    VQQWPAGIQA PGFFRHELSG MPAWLPTLRV KHEAKTLAHV NVQSLEALLW 650
    LANQSALTLH IWSSHAPKLA QPDWVVFDLD PGKGPWEDVI TVAQALREKL 700
    EALGLESLPK TSGKRGLHVL IPLAPGHTYA QTQRFAEKIA AELETELGSL 750
    ATTERTIQKR RGRLYLDVGQ NGRGKTVVAP YSLRAIPGAP FSAPLAWSEV 800
    TRKLDPLRFT LKTLSKRLDA VGDLFARALH GTQTLP 836
    Length:836
    Mass (Da):93,061
    Last modified:October 31, 2006 - v1
    Checksum:iFD4FE49892184E37
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002271 Genomic DNA. Translation: ADO74753.1.
    AAMD01000001 Genomic DNA. Translation: EAU70093.1.
    RefSeqiWP_002609400.1. NZ_AAMD01000001.1.
    YP_003956580.1. NC_014623.1.

    Genome annotation databases

    EnsemblBacteriaiADO74753; ADO74753; STAUR_6997.
    EAU70093; EAU70093; STIAU_8411.
    GeneIDi9880490.
    KEGGisur:STAUR_6997.
    PATRICi38547974. VBIStiAur43712_0109.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002271 Genomic DNA. Translation: ADO74753.1 .
    AAMD01000001 Genomic DNA. Translation: EAU70093.1 .
    RefSeqi WP_002609400.1. NZ_AAMD01000001.1.
    YP_003956580.1. NC_014623.1.

    3D structure databases

    ProteinModelPortali Q09E36.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADO74753 ; ADO74753 ; STAUR_6997 .
    EAU70093 ; EAU70093 ; STIAU_8411 .
    GeneIDi 9880490.
    KEGGi sur:STAUR_6997.
    PATRICi 38547974. VBIStiAur43712_0109.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci SAUR378806:GCZI-6997-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Nierman W.C.
      Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: DW4/3-1Imported.
    2. "Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
      Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
      Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DW4/3-1Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: DW4/3-1Imported.

    Entry informationi

    Entry nameiQ09E36_STIAD
    AccessioniPrimary (citable) accession number: Q09E36
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3