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Q09E36

- Q09E36_STIAD

UniProt

Q09E36 - Q09E36_STIAD

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Protein
Submitted name: ATP dependent DNA ligase
Gene
ligD, STAUR_6997, STIAU_8411
Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSAUR378806:GCZI-6997-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:STAUR_6997Imported
ORF Names:STIAU_8411Imported
OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
Taxonomic identifieri378806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella
ProteomesiUP000001351: Chromosome

Structurei

3D structure databases

ProteinModelPortaliQ09E36.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q09E36-1 [UniParc]FASTAAdd to Basket

« Hide

MKTPRSLRTY RAKRDFQKTS EPAPEAKAPR RRGAPPLFVV HKHDATRLHY    50
DLRLEIDGAL ASWALPKGPS FDPKTKRLAV ETEDHPLAYA GFEGRIPEGE 100
YGGGDSLLWD RGTYETVPPG EAPEQRKKGH LTVQLHGEKL KGRWHLIRTK 150
SRGKKAQWLC FKAMDGEADA DYDVTADRPE SVKSGRSATR GPVRKGALKS 200
RPLPAEQLLE RVWPPMLAQL SVPTEADDAT HLYEVKYDGF RALAALSSGA 250
LTLHSRNGHD LSGRFPQLAE ALRQLRVTEA VLDGEIIALD PQGRSRFQLL 300
QKGSDAEQRF VAFDLLWLDG EDLRPRPLEA RRELLEQLLS GVKPPLQLSE 350
RLDLPGDEAL AKARSQGWEG LIAKRRGAPY VGSRSRDWLK LKVQAAQETV 400
ILGYLPIQNA RAREEIGALL VGVHGPDGYH DVGKVGTGFS SETRRELRAL 450
LDRQRVRAPV AVDAKPRPGA VWVKPKYVAQ VHFTEWTHDG RLRHPVFQGL 500
RTDKKPQEVV REQVSEPRKA AQKSKAAPKS GARRAPRAFS ARATRSQVQE 550
EPAEAEGRAR LTHGDRVLYP QERLTKQDVF AYYREAAPLL LPVLANRPLA 600
VQQWPAGIQA PGFFRHELSG MPAWLPTLRV KHEAKTLAHV NVQSLEALLW 650
LANQSALTLH IWSSHAPKLA QPDWVVFDLD PGKGPWEDVI TVAQALREKL 700
EALGLESLPK TSGKRGLHVL IPLAPGHTYA QTQRFAEKIA AELETELGSL 750
ATTERTIQKR RGRLYLDVGQ NGRGKTVVAP YSLRAIPGAP FSAPLAWSEV 800
TRKLDPLRFT LKTLSKRLDA VGDLFARALH GTQTLP 836
Length:836
Mass (Da):93,061
Last modified:October 31, 2006 - v1
Checksum:iFD4FE49892184E37
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002271 Genomic DNA. Translation: ADO74753.1.
AAMD01000001 Genomic DNA. Translation: EAU70093.1.
RefSeqiWP_002609400.1. NZ_AAMD01000001.1.
YP_003956580.1. NC_014623.1.

Genome annotation databases

EnsemblBacteriaiADO74753; ADO74753; STAUR_6997.
EAU70093; EAU70093; STIAU_8411.
GeneIDi9880490.
KEGGisur:STAUR_6997.
PATRICi38547974. VBIStiAur43712_0109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002271 Genomic DNA. Translation: ADO74753.1 .
AAMD01000001 Genomic DNA. Translation: EAU70093.1 .
RefSeqi WP_002609400.1. NZ_AAMD01000001.1.
YP_003956580.1. NC_014623.1.

3D structure databases

ProteinModelPortali Q09E36.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADO74753 ; ADO74753 ; STAUR_6997 .
EAU70093 ; EAU70093 ; STIAU_8411 .
GeneIDi 9880490.
KEGGi sur:STAUR_6997.
PATRICi 38547974. VBIStiAur43712_0109.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SAUR378806:GCZI-6997-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Nierman W.C.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DW4/3-1Imported.
  2. "Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
    Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
    Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DW4/3-1.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DW4/3-1Imported.

Entry informationi

Entry nameiQ09E36_STIAD
AccessioniPrimary (citable) accession number: Q09E36
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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