Q09E36 (Q09E36_STIAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADO74753.1

Submitted name:
DNA ligase D EMBL EAU70093.1

Gene names

Name:	ligD EMBL EAU70093.1
Ordered Locus Names:	STAUR_6997
ORF Names:	STIAU_8411 EMBL EAU70093.1

Organism

Stigmatella aurantiaca (strain DW4/3-1) [Complete proteome] [HAMAP] EMBL EAU70093.1

Taxonomic identifier

378806 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Myxococcales › Cystobacterineae › Cystobacteraceae › Stigmatella › Stigmatella aurantiaca

Protein attributes

Sequence length	836 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL EAU70093.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q09E36 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: FD4FE49892184E37	FASTA	836	93,061
	10 20 30 40 50 60 MKTPRSLRTY RAKRDFQKTS EPAPEAKAPR RRGAPPLFVV HKHDATRLHY DLRLEIDGAL 70 80 90 100 110 120 ASWALPKGPS FDPKTKRLAV ETEDHPLAYA GFEGRIPEGE YGGGDSLLWD RGTYETVPPG 130 140 150 160 170 180 EAPEQRKKGH LTVQLHGEKL KGRWHLIRTK SRGKKAQWLC FKAMDGEADA DYDVTADRPE 190 200 210 220 230 240 SVKSGRSATR GPVRKGALKS RPLPAEQLLE RVWPPMLAQL SVPTEADDAT HLYEVKYDGF 250 260 270 280 290 300 RALAALSSGA LTLHSRNGHD LSGRFPQLAE ALRQLRVTEA VLDGEIIALD PQGRSRFQLL 310 320 330 340 350 360 QKGSDAEQRF VAFDLLWLDG EDLRPRPLEA RRELLEQLLS GVKPPLQLSE RLDLPGDEAL 370 380 390 400 410 420 AKARSQGWEG LIAKRRGAPY VGSRSRDWLK LKVQAAQETV ILGYLPIQNA RAREEIGALL 430 440 450 460 470 480 VGVHGPDGYH DVGKVGTGFS SETRRELRAL LDRQRVRAPV AVDAKPRPGA VWVKPKYVAQ 490 500 510 520 530 540 VHFTEWTHDG RLRHPVFQGL RTDKKPQEVV REQVSEPRKA AQKSKAAPKS GARRAPRAFS 550 560 570 580 590 600 ARATRSQVQE EPAEAEGRAR LTHGDRVLYP QERLTKQDVF AYYREAAPLL LPVLANRPLA 610 620 630 640 650 660 VQQWPAGIQA PGFFRHELSG MPAWLPTLRV KHEAKTLAHV NVQSLEALLW LANQSALTLH 670 680 690 700 710 720 IWSSHAPKLA QPDWVVFDLD PGKGPWEDVI TVAQALREKL EALGLESLPK TSGKRGLHVL 730 740 750 760 770 780 IPLAPGHTYA QTQRFAEKIA AELETELGSL ATTERTIQKR RGRLYLDVGQ NGRGKTVVAP 790 800 810 820 830 YSLRAIPGAP FSAPLAWSEV TRKLDPLRFT LKTLSKRLDA VGDLFARALH GTQTLP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Nierman W.C. Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DW4/3-1 EMBL EAU70093.1.
[2]	"Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis." Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L. Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DW4/3-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002271 Genomic DNA. Translation: ADO74753.1. AAMD01000001 Genomic DNA. Translation: EAU70093.1.
RefSeq	YP_003956580.1. NC_014623.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADO74753; ADO74753; STAUR_6997. EAU70093; EAU70093; STIAU_8411.
GeneID	9880490.
KEGG	sur:STAUR_6997.
PATRIC	38547974. VBIStiAur43712_0109.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q09E36_STIAD

Accession

Primary (citable) accession number: Q09E36

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)