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Q09E36

- Q09E36_STIAD

UniProt

Q09E36 - Q09E36_STIAD

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

ligD

Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSAUR378806:GCZI-6997-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:STAUR_6997Imported
ORF Names:STIAU_8411Imported
OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
Taxonomic identifieri378806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella
ProteomesiUP000001351: Chromosome

Structurei

3D structure databases

ProteinModelPortaliQ09E36.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q09E36-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTPRSLRTY RAKRDFQKTS EPAPEAKAPR RRGAPPLFVV HKHDATRLHY
60 70 80 90 100
DLRLEIDGAL ASWALPKGPS FDPKTKRLAV ETEDHPLAYA GFEGRIPEGE
110 120 130 140 150
YGGGDSLLWD RGTYETVPPG EAPEQRKKGH LTVQLHGEKL KGRWHLIRTK
160 170 180 190 200
SRGKKAQWLC FKAMDGEADA DYDVTADRPE SVKSGRSATR GPVRKGALKS
210 220 230 240 250
RPLPAEQLLE RVWPPMLAQL SVPTEADDAT HLYEVKYDGF RALAALSSGA
260 270 280 290 300
LTLHSRNGHD LSGRFPQLAE ALRQLRVTEA VLDGEIIALD PQGRSRFQLL
310 320 330 340 350
QKGSDAEQRF VAFDLLWLDG EDLRPRPLEA RRELLEQLLS GVKPPLQLSE
360 370 380 390 400
RLDLPGDEAL AKARSQGWEG LIAKRRGAPY VGSRSRDWLK LKVQAAQETV
410 420 430 440 450
ILGYLPIQNA RAREEIGALL VGVHGPDGYH DVGKVGTGFS SETRRELRAL
460 470 480 490 500
LDRQRVRAPV AVDAKPRPGA VWVKPKYVAQ VHFTEWTHDG RLRHPVFQGL
510 520 530 540 550
RTDKKPQEVV REQVSEPRKA AQKSKAAPKS GARRAPRAFS ARATRSQVQE
560 570 580 590 600
EPAEAEGRAR LTHGDRVLYP QERLTKQDVF AYYREAAPLL LPVLANRPLA
610 620 630 640 650
VQQWPAGIQA PGFFRHELSG MPAWLPTLRV KHEAKTLAHV NVQSLEALLW
660 670 680 690 700
LANQSALTLH IWSSHAPKLA QPDWVVFDLD PGKGPWEDVI TVAQALREKL
710 720 730 740 750
EALGLESLPK TSGKRGLHVL IPLAPGHTYA QTQRFAEKIA AELETELGSL
760 770 780 790 800
ATTERTIQKR RGRLYLDVGQ NGRGKTVVAP YSLRAIPGAP FSAPLAWSEV
810 820 830
TRKLDPLRFT LKTLSKRLDA VGDLFARALH GTQTLP
Length:836
Mass (Da):93,061
Last modified:October 31, 2006 - v1
Checksum:iFD4FE49892184E37
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002271 Genomic DNA. Translation: ADO74753.1.
AAMD01000001 Genomic DNA. Translation: EAU70093.1.
RefSeqiYP_003956580.1. NC_014623.1.

Genome annotation databases

EnsemblBacteriaiADO74753; ADO74753; STAUR_6997.
EAU70093; EAU70093; STIAU_8411.
GeneIDi9880490.
KEGGisur:STAUR_6997.
PATRICi38547974. VBIStiAur43712_0109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002271 Genomic DNA. Translation: ADO74753.1 .
AAMD01000001 Genomic DNA. Translation: EAU70093.1 .
RefSeqi YP_003956580.1. NC_014623.1.

3D structure databases

ProteinModelPortali Q09E36.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADO74753 ; ADO74753 ; STAUR_6997 .
EAU70093 ; EAU70093 ; STIAU_8411 .
GeneIDi 9880490.
KEGGi sur:STAUR_6997.
PATRICi 38547974. VBIStiAur43712_0109.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SAUR378806:GCZI-6997-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Nierman W.C.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DW4/3-1Imported.
  2. "Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
    Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
    Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DW4/3-1Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DW4/3-1Imported.

Entry informationi

Entry nameiQ09E36_STIAD
AccessioniPrimary (citable) accession number: Q09E36
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: October 29, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3