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Protein

Superoxide dismutase

Gene

sodB

Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi27Divalent metal cationUniRule annotation1
Metal bindingi74Divalent metal cationUniRule annotation1
Metal bindingi156Divalent metal cationUniRule annotation1
Metal bindingi160Divalent metal cationUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotationImported
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:STAUR_1847Imported
ORF Names:STIAU_3637Imported
OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
Taxonomic identifieri378806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeArchangiaceaeStigmatella
Proteomesi
  • UP000032702 Componenti: Unassembled WGS sequence
  • UP000001351 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi378806.STAUR_1847.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 82Sod_Fe_NInterPro annotationAdd BLAST80
Domaini89 – 188Sod_Fe_CInterPro annotationAdd BLAST100

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
KOiK04564.
OMAiFGTGWVW.
OrthoDBiPOG091H03Q7.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q09CK0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPFMLPELPY PKDALAPHMS AETLDYHHGK HHATYVNKLN ELLAGKPEAD
60 70 80 90 100
KSLVDIILSS DGPVFNNAAQ VWNHTFFWHC MKPSGGGAPA GELADAINRD
110 120 130 140 150
FGSYDNFKKA FSEAATTQFG SGWAWLVQDG SKLAVMKTAN ADLPMKHGKK
160 170 180 190
ALLTIDVWEH AYYIDYRNAR PKFIETFLTS LVNWDFVAGN LKNP
Length:194
Mass (Da):21,626
Last modified:October 31, 2006 - v1
Checksum:i2F4133F2AD3D3F25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002271 Genomic DNA. Translation: ADO69651.1.
AAMD01000006 Genomic DNA. Translation: EAU69437.1.
RefSeqiWP_002610701.1. NZ_AAMD01000484.1.

Genome annotation databases

EnsemblBacteriaiADO69651; ADO69651; STAUR_1847.
EAU69437; EAU69437; STIAU_3637.
KEGGisur:STAUR_1847.
PATRICifig|378806.16.peg.8749.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002271 Genomic DNA. Translation: ADO69651.1.
AAMD01000006 Genomic DNA. Translation: EAU69437.1.
RefSeqiWP_002610701.1. NZ_AAMD01000484.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi378806.STAUR_1847.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADO69651; ADO69651; STAUR_1847.
EAU69437; EAU69437; STIAU_3637.
KEGGisur:STAUR_1847.
PATRICifig|378806.16.peg.8749.

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
KOiK04564.
OMAiFGTGWVW.
OrthoDBiPOG091H03Q7.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ09CK0_STIAD
AccessioniPrimary (citable) accession number: Q09CK0
Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: June 7, 2017
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.