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Protein

E3 ubiquitin-protein ligase arc-1

Gene

arc-1

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Acts as an E3 ubiquitin-protein ligase.By similarity

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri6 – 5348RING-typePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri103 – 14947B box-typePROSITE-ProRule annotationAdd
BLAST
Nucleotide bindingi376 – 3838GTPBy similarity
Nucleotide bindingi422 – 4265GTPBy similarity
Nucleotide bindingi481 – 4844GTPBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Ubl conjugation pathway

Keywords - Ligandi

GTP-binding, Metal-binding, Nucleotide-binding, Zinc

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
E3 ubiquitin-protein ligase arc-1 (EC:6.3.2.-)
Alternative name(s):
Putative GTP-binding protein trim-23 homolog
Gene namesi
Name:arc-1
Synonyms:arl-4
ORF Names:ZK1320.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiZK1320.6; CE37598; WBGene00000180; arc-1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 539539E3 ubiquitin-protein ligase arc-1PRO_0000207486Add
BLAST

Proteomic databases

PaxDbiQ09654.

Interactioni

Protein-protein interaction databases

IntActiQ09654. 1 interaction.
MINTiMINT-3386265.
STRINGi6239.ZK1320.6.2.

Structurei

3D structure databases

ProteinModelPortaliQ09654.
SMRiQ09654. Positions 2-80, 369-527.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni369 – 539171ARF-likeAdd
BLAST

Sequence similaritiesi

In the C-terminal section; belongs to the small GTPase superfamily. Arf family.Curated
Contains 1 B box-type zinc finger.PROSITE-ProRule annotationCurated
Contains 1 RING-type zinc finger.PROSITE-ProRule annotationCurated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri6 – 5348RING-typePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri103 – 14947B box-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG0070. Eukaryota.
KOG4185. Eukaryota.
ENOG410ZGPK. LUCA.
GeneTreeiENSGT00780000121855.
InParanoidiQ09654.
KOiK07963.
OMAiRAVRCPF.
PhylomeDBiQ09654.

Family and domain databases

Gene3Di3.30.40.10. 2 hits.
3.40.50.300. 1 hit.
InterProiIPR003649. Bbox_C.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR024156. Small_GTPase_ARF.
IPR006689. Small_GTPase_ARF/SAR.
IPR027370. Znf-RING_LisH.
IPR000315. Znf_B-box.
IPR007087. Znf_C2H2.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamiPF00025. Arf. 1 hit.
PF00643. zf-B_box. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
[Graphical view]
PRINTSiPR00328. SAR1GTPBP.
SMARTiSM00502. BBC. 1 hit.
SM00336. BBOX. 2 hits.
SM00184. RING. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51417. ARF. 1 hit.
PS50119. ZF_BBOX. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q09654-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEYGCNVCN EEYSARDPLK CPRVLTGCGH TICHNCAISI AGRNSSIFCP
60 70 80 90 100
FDRTATQIPG GDLQNLKKNF ALLELLEKIA DGGGLLEKSG EVVKFDRYSK
110 120 130 140 150
ERLLNLECDE DSEHVAVIYC TVCDSNLCER CSESTHSTNV LSKHRRIPLT
160 170 180 190 200
EKPPPLVHCR LHSSYVVEFV CKELSCDTES PLMCMMCRDY GRHKGHSHVL
210 220 230 240 250
IEKEVEDLRE KVREHLGELS KQSETIGNAL HSIDSVIHEL TPGQEDGSLE
260 270 280 290 300
ETRQEVRNHF RRLRTALDRD EEDAVETVDR YARNRVESLQ TQKERLEAIS
310 320 330 340 350
SKIGNTCTTL QKALIMERGK ILDRKDDLLA LAESTAAEPT AVLDQSQLST
360 370 380 390 400
RIAFSFLNDR KLHIGDFIES RVVLLGLDGA GKTSIVRRLK KVQMDTVMAP
410 420 430 440 450
HPTIGFNIET IHYKNYRLNF WDVGGLPKLR HLWKHYYSNA QAIFYVIDGY
460 470 480 490 500
AVERFSEAIK ELNRVMSDPL VGTCPVIVAV NRKDGYALNG HMDALLSQLE
510 520 530
ALPFQHHFHC CDAATGSGID QIIDQITVCL SRLNGTCPV
Length:539
Mass (Da):60,682
Last modified:May 24, 2005 - v3
Checksum:i79F959556BB0755A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46934 Genomic DNA. Translation: CAA87044.3.
PIRiT27752.
RefSeqiNP_496089.3. NM_063688.5.
UniGeneiCel.8296.

Genome annotation databases

EnsemblMetazoaiZK1320.6; ZK1320.6; WBGene00000180.
GeneIDi174525.
KEGGicel:CELE_ZK1320.6.
UCSCiZK1320.6. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46934 Genomic DNA. Translation: CAA87044.3.
PIRiT27752.
RefSeqiNP_496089.3. NM_063688.5.
UniGeneiCel.8296.

3D structure databases

ProteinModelPortaliQ09654.
SMRiQ09654. Positions 2-80, 369-527.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ09654. 1 interaction.
MINTiMINT-3386265.
STRINGi6239.ZK1320.6.2.

Proteomic databases

PaxDbiQ09654.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiZK1320.6; ZK1320.6; WBGene00000180.
GeneIDi174525.
KEGGicel:CELE_ZK1320.6.
UCSCiZK1320.6. c. elegans.

Organism-specific databases

CTDi174525.
WormBaseiZK1320.6; CE37598; WBGene00000180; arc-1.

Phylogenomic databases

eggNOGiKOG0070. Eukaryota.
KOG4185. Eukaryota.
ENOG410ZGPK. LUCA.
GeneTreeiENSGT00780000121855.
InParanoidiQ09654.
KOiK07963.
OMAiRAVRCPF.
PhylomeDBiQ09654.

Enzyme and pathway databases

UniPathwayiUPA00143.

Miscellaneous databases

PROiQ09654.

Family and domain databases

Gene3Di3.30.40.10. 2 hits.
3.40.50.300. 1 hit.
InterProiIPR003649. Bbox_C.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR024156. Small_GTPase_ARF.
IPR006689. Small_GTPase_ARF/SAR.
IPR027370. Znf-RING_LisH.
IPR000315. Znf_B-box.
IPR007087. Znf_C2H2.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamiPF00025. Arf. 1 hit.
PF00643. zf-B_box. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
[Graphical view]
PRINTSiPR00328. SAR1GTPBP.
SMARTiSM00502. BBC. 1 hit.
SM00336. BBOX. 2 hits.
SM00184. RING. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51417. ARF. 1 hit.
PS50119. ZF_BBOX. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiTRI23_CAEEL
AccessioniPrimary (citable) accession number: Q09654
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2003
Last sequence update: May 24, 2005
Last modified: July 6, 2016
This is version 119 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.